Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5538 | 5' | -54.2 | NC_001806.1 | + | 125732 | 0.72 | 0.730495 |
Target: 5'- -gGCCAUcggUCCCcUCUGGcCCGCCu -3' miRNA: 3'- agCGGUAcaaAGGGcAGACCaGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 126661 | 0.69 | 0.869009 |
Target: 5'- aCGCCAcaccaucucccccgUG--UCCUGgagcuccggggaUCUGGUCCGCCg -3' miRNA: 3'- aGCGGU--------------ACaaAGGGC------------AGACCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 129611 | 0.66 | 0.955669 |
Target: 5'- gCGCCGgugccUGUUUCUcccgCGUCUGGggaccgagcUCCugCa -3' miRNA: 3'- aGCGGU-----ACAAAGG----GCAGACC---------AGGugG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 135511 | 0.66 | 0.951696 |
Target: 5'- aUGUCAUaGUcggCCCGgagCaGGUCCGCCc -3' miRNA: 3'- aGCGGUA-CAaa-GGGCa--GaCCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 144758 | 0.67 | 0.943054 |
Target: 5'- gUCGCCGgaaUGUUUCguUCGUCU-GUCC-CCu -3' miRNA: 3'- -AGCGGU---ACAAAG--GGCAGAcCAGGuGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 146879 | 1.13 | 0.002446 |
Target: 5'- gUCGCCAUGUUUCCCGUCUGGUCCACCa -3' miRNA: 3'- -AGCGGUACAAAGGGCAGACCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 146916 | 0.66 | 0.959413 |
Target: 5'- aCGCCccgAUGUUcCCCGUCUccauGUCCAg- -3' miRNA: 3'- aGCGG---UACAAaGGGCAGAc---CAGGUgg -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 148072 | 0.66 | 0.951696 |
Target: 5'- cUGCCGUGUggCCCGa-UGGg-CGCCg -3' miRNA: 3'- aGCGGUACAaaGGGCagACCagGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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