miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 5' -54.2 NC_001806.1 + 125732 0.72 0.730495
Target:  5'- -gGCCAUcggUCCCcUCUGGcCCGCCu -3'
miRNA:   3'- agCGGUAcaaAGGGcAGACCaGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 126661 0.69 0.869009
Target:  5'- aCGCCAcaccaucucccccgUG--UCCUGgagcuccggggaUCUGGUCCGCCg -3'
miRNA:   3'- aGCGGU--------------ACaaAGGGC------------AGACCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 129611 0.66 0.955669
Target:  5'- gCGCCGgugccUGUUUCUcccgCGUCUGGggaccgagcUCCugCa -3'
miRNA:   3'- aGCGGU-----ACAAAGG----GCAGACC---------AGGugG- -5'
5538 5' -54.2 NC_001806.1 + 135511 0.66 0.951696
Target:  5'- aUGUCAUaGUcggCCCGgagCaGGUCCGCCc -3'
miRNA:   3'- aGCGGUA-CAaa-GGGCa--GaCCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 144758 0.67 0.943054
Target:  5'- gUCGCCGgaaUGUUUCguUCGUCU-GUCC-CCu -3'
miRNA:   3'- -AGCGGU---ACAAAG--GGCAGAcCAGGuGG- -5'
5538 5' -54.2 NC_001806.1 + 146879 1.13 0.002446
Target:  5'- gUCGCCAUGUUUCCCGUCUGGUCCACCa -3'
miRNA:   3'- -AGCGGUACAAAGGGCAGACCAGGUGG- -5'
5538 5' -54.2 NC_001806.1 + 146916 0.66 0.959413
Target:  5'- aCGCCccgAUGUUcCCCGUCUccauGUCCAg- -3'
miRNA:   3'- aGCGG---UACAAaGGGCAGAc---CAGGUgg -5'
5538 5' -54.2 NC_001806.1 + 148072 0.66 0.951696
Target:  5'- cUGCCGUGUggCCCGa-UGGg-CGCCg -3'
miRNA:   3'- aGCGGUACAaaGGGCagACCagGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.