Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5538 | 5' | -54.2 | NC_001806.1 | + | 126661 | 0.69 | 0.869009 |
Target: 5'- aCGCCAcaccaucucccccgUG--UCCUGgagcuccggggaUCUGGUCCGCCg -3' miRNA: 3'- aGCGGU--------------ACaaAGGGC------------AGACCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 2680 | 0.69 | 0.87123 |
Target: 5'- cCGCCGUGUggcugggcCCCGg--GGgcugCCGCCg -3' miRNA: 3'- aGCGGUACAaa------GGGCagaCCa---GGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 85444 | 0.69 | 0.885532 |
Target: 5'- aCGUCAUcUUUCCCGgcacGUCCGCCc -3' miRNA: 3'- aGCGGUAcAAAGGGCagacCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 19014 | 0.68 | 0.892346 |
Target: 5'- -gGCgCAUGUagCCCagGUCgggGGUCCAUCg -3' miRNA: 3'- agCG-GUACAaaGGG--CAGa--CCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 51031 | 0.68 | 0.892346 |
Target: 5'- -gGuCCGUGUUgggCCCG-CgGGUCCGCg -3' miRNA: 3'- agC-GGUACAAa--GGGCaGaCCAGGUGg -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 37916 | 0.68 | 0.911996 |
Target: 5'- cUCGCCAUGggggcgccggggCCGUCc-GUCCACCc -3' miRNA: 3'- -AGCGGUACaaag--------GGCAGacCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 114246 | 0.68 | 0.917274 |
Target: 5'- aCGCCAUGUUUCacaaCGggcgCgUGGUaguggacgggcCCGCCa -3' miRNA: 3'- aGCGGUACAAAGg---GCa---G-ACCA-----------GGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 28237 | 0.66 | 0.962933 |
Target: 5'- gCGCCAUGUUgggggaccCCCGacccuuacaCUGGaaccggCCGCCa -3' miRNA: 3'- aGCGGUACAAa-------GGGCa--------GACCa-----GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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