miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 3' -65.2 NC_001806.1 + 33364 0.69 0.300746
Target:  5'- --aGGGgGGCCCGGagaGCCGCGGCa--- -3'
miRNA:   3'- cagUCCgUCGGGCC---CGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 115114 0.69 0.314217
Target:  5'- uUCGGGUGcGCCCaGGuGCCGCGGCg--- -3'
miRNA:   3'- cAGUCCGU-CGGG-CC-CGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 4190 0.69 0.314217
Target:  5'- --gGGGCccGGCgCCGGGCCaCGGCUCc- -3'
miRNA:   3'- cagUCCG--UCG-GGCCCGGcGCCGAGac -5'
5539 3' -65.2 NC_001806.1 + 131965 0.69 0.333118
Target:  5'- cGUCcuGGCGGCCCuggagcgccagaccGGGCCGgUGGCcCUGu -3'
miRNA:   3'- -CAGu-CCGUCGGG--------------CCCGGC-GCCGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 6080 0.69 0.335268
Target:  5'- --gGGGCgGGCCCGGGCgGCGGggggcggguCUCUc -3'
miRNA:   3'- cagUCCG-UCGGGCCCGgCGCC---------GAGAc -5'
5539 3' -65.2 NC_001806.1 + 4743 0.68 0.349866
Target:  5'- -cCGGGCcggGGCCCGGucGCCGgCGGCgucggCUGc -3'
miRNA:   3'- caGUCCG---UCGGGCC--CGGC-GCCGa----GAC- -5'
5539 3' -65.2 NC_001806.1 + 56520 0.68 0.349866
Target:  5'- ---cGGCAgGCCCGGGCC-CGGCg--- -3'
miRNA:   3'- caguCCGU-CGGGCCCGGcGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 75983 0.68 0.349866
Target:  5'- --gAGcGCGGCCUucgGGGCCGCGGC-Cg- -3'
miRNA:   3'- cagUC-CGUCGGG---CCCGGCGCCGaGac -5'
5539 3' -65.2 NC_001806.1 + 24329 0.68 0.357332
Target:  5'- -aCGGuGCuGGCCuCGGGCCGCGuGUUCg- -3'
miRNA:   3'- caGUC-CG-UCGG-GCCCGGCGC-CGAGac -5'
5539 3' -65.2 NC_001806.1 + 57025 0.68 0.380395
Target:  5'- -cCAGGCacuggguggccgGGCCCgGGGCCGgGGCccccggCUGc -3'
miRNA:   3'- caGUCCG------------UCGGG-CCCGGCgCCGa-----GAC- -5'
5539 3' -65.2 NC_001806.1 + 72692 0.67 0.388301
Target:  5'- aUCGGGC-GCCCgacgauguauGGGCgGUGGCcCUGa -3'
miRNA:   3'- cAGUCCGuCGGG----------CCCGgCGCCGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 69860 0.67 0.390693
Target:  5'- cUCGGGCAGCCCagccacgcccccucuGuccaccuGGCCGCGGCg--- -3'
miRNA:   3'- cAGUCCGUCGGG---------------C-------CCGGCGCCGagac -5'
5539 3' -65.2 NC_001806.1 + 5893 0.67 0.396314
Target:  5'- -gCGGGCGGCCCaaGGGCCGCccGCcUUGc -3'
miRNA:   3'- caGUCCGUCGGG--CCCGGCGc-CGaGAC- -5'
5539 3' -65.2 NC_001806.1 + 27134 0.67 0.396314
Target:  5'- --gAGGCGGCCUGGGucuuCCGCGgaGCUCc- -3'
miRNA:   3'- cagUCCGUCGGGCCC----GGCGC--CGAGac -5'
5539 3' -65.2 NC_001806.1 + 76589 0.67 0.412655
Target:  5'- -cCGGGCccAGCUCGaGGCCGaGGgUCUGg -3'
miRNA:   3'- caGUCCG--UCGGGC-CCGGCgCCgAGAC- -5'
5539 3' -65.2 NC_001806.1 + 107028 0.67 0.43793
Target:  5'- -cCGGGUuggccGCCCgcgGGGCCGCgGGCUgUGc -3'
miRNA:   3'- caGUCCGu----CGGG---CCCGGCG-CCGAgAC- -5'
5539 3' -65.2 NC_001806.1 + 38274 0.67 0.43793
Target:  5'- -aCGGGCGGaccgCCGGGCgaGCGGCgUCg- -3'
miRNA:   3'- caGUCCGUCg---GGCCCGg-CGCCG-AGac -5'
5539 3' -65.2 NC_001806.1 + 148100 0.67 0.43793
Target:  5'- --gGGGCGcuGUCCGaGCCGCGGCcggCUGg -3'
miRNA:   3'- cagUCCGU--CGGGCcCGGCGCCGa--GAC- -5'
5539 3' -65.2 NC_001806.1 + 25911 0.67 0.43793
Target:  5'- ---cGGCGGUCCGGGCgGCGuGCg--- -3'
miRNA:   3'- caguCCGUCGGGCCCGgCGC-CGagac -5'
5539 3' -65.2 NC_001806.1 + 26955 0.67 0.43793
Target:  5'- cUC-GGCcGCCCGccuggcgcGCCGCGGCUCg- -3'
miRNA:   3'- cAGuCCGuCGGGCc-------CGGCGCCGAGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.