Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5539 | 3' | -65.2 | NC_001806.1 | + | 27134 | 0.67 | 0.396314 |
Target: 5'- --gAGGCGGCCUGGGucuuCCGCGgaGCUCc- -3' miRNA: 3'- cagUCCGUCGGGCCC----GGCGC--CGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 28017 | 0.7 | 0.263025 |
Target: 5'- -cCAGGCAGaCUCGGGCCGCcccCUCUc -3' miRNA: 3'- caGUCCGUC-GGGCCCGGCGcc-GAGAc -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 29835 | 0.74 | 0.138719 |
Target: 5'- cUCAcGCAGCCCcccagccGGCCGCGGCUCg- -3' miRNA: 3'- cAGUcCGUCGGGc------CCGGCGCCGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 31727 | 0.66 | 0.455265 |
Target: 5'- aGUgGGGguGCCauguuGGGCa--GGCUCUGg -3' miRNA: 3'- -CAgUCCguCGGg----CCCGgcgCCGAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 32943 | 0.66 | 0.491001 |
Target: 5'- -cCGGGCcguuguggGGcCCCGGGCCGgGGCc--- -3' miRNA: 3'- caGUCCG--------UC-GGGCCCGGCgCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 33364 | 0.69 | 0.300746 |
Target: 5'- --aGGGgGGCCCGGagaGCCGCGGCa--- -3' miRNA: 3'- cagUCCgUCGGGCC---CGGCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 38274 | 0.67 | 0.43793 |
Target: 5'- -aCGGGCGGaccgCCGGGCgaGCGGCgUCg- -3' miRNA: 3'- caGUCCGUCg---GGCCCGg-CGCCG-AGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 49356 | 0.66 | 0.481941 |
Target: 5'- cGUCccGGCAGCgccCCGGGCCcgauGCGGCcCg- -3' miRNA: 3'- -CAGu-CCGUCG---GGCCCGG----CGCCGaGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 52458 | 0.71 | 0.223978 |
Target: 5'- --gGGGCcGCCCuGGCCGCGGaUCUGc -3' miRNA: 3'- cagUCCGuCGGGcCCGGCGCCgAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 56520 | 0.68 | 0.349866 |
Target: 5'- ---cGGCAgGCCCGGGCC-CGGCg--- -3' miRNA: 3'- caguCCGU-CGGGCCCGGcGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 57025 | 0.68 | 0.380395 |
Target: 5'- -cCAGGCacuggguggccgGGCCCgGGGCCGgGGCccccggCUGc -3' miRNA: 3'- caGUCCG------------UCGGG-CCCGGCgCCGa-----GAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 59142 | 0.71 | 0.245651 |
Target: 5'- --aGGGCAG-CCGGGCCGgGGuCUCg- -3' miRNA: 3'- cagUCCGUCgGGCCCGGCgCC-GAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 64958 | 0.71 | 0.229239 |
Target: 5'- cGUC-GGC-GCCCGGGCCGgGGgUCc- -3' miRNA: 3'- -CAGuCCGuCGGGCCCGGCgCCgAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 69860 | 0.67 | 0.390693 |
Target: 5'- cUCGGGCAGCCCagccacgcccccucuGuccaccuGGCCGCGGCg--- -3' miRNA: 3'- cAGUCCGUCGGG---------------C-------CCGGCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 72371 | 0.72 | 0.197318 |
Target: 5'- cGUCGGGCccggaacccgcGGCUCcugcggacuugacGGCCGCGGCUCUGc -3' miRNA: 3'- -CAGUCCG-----------UCGGGc------------CCGGCGCCGAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 72692 | 0.67 | 0.388301 |
Target: 5'- aUCGGGC-GCCCgacgauguauGGGCgGUGGCcCUGa -3' miRNA: 3'- cAGUCCGuCGGG----------CCCGgCGCCGaGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 75983 | 0.68 | 0.349866 |
Target: 5'- --gAGcGCGGCCUucgGGGCCGCGGC-Cg- -3' miRNA: 3'- cagUC-CGUCGGG---CCCGGCGCCGaGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 76589 | 0.67 | 0.412655 |
Target: 5'- -cCGGGCccAGCUCGaGGCCGaGGgUCUGg -3' miRNA: 3'- caGUCCG--UCGGGC-CCGGCgCCgAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 77963 | 0.72 | 0.199194 |
Target: 5'- ---cGGCGGCCCcgGGGCCGCcGCUCg- -3' miRNA: 3'- caguCCGUCGGG--CCCGGCGcCGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 86661 | 0.71 | 0.251334 |
Target: 5'- cGUCAgcccGGCGGCCgUGaGGCCGCGGCa--- -3' miRNA: 3'- -CAGU----CCGUCGG-GC-CCGGCGCCGagac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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