miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 130635 0.68 0.702523
Target:  5'- uGCUGGAgGCCUGUCUccgcguuccCAUGGCcACCCg -3'
miRNA:   3'- -UGGUCU-CGGACGGGuu-------GUACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 79823 0.68 0.702523
Target:  5'- cCCAGAGCCagcGcCCCAGCuuUGGUgucugguguGCCCc -3'
miRNA:   3'- uGGUCUCGGa--C-GGGUUGu-ACCG---------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 1737 0.68 0.702523
Target:  5'- cGCCGGcAGCacgGCCCGGC--GGUACUCg -3'
miRNA:   3'- -UGGUC-UCGga-CGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 143541 0.68 0.671328
Target:  5'- cCCGGcccGGCCcgGCCCGGCccGGCcaccgccGCCCa -3'
miRNA:   3'- uGGUC---UCGGa-CGGGUUGuaCCG-------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 128034 0.68 0.662203
Target:  5'- gGCCAG-GCCgacgaUGCCCGugGcGGCcacgGCCCc -3'
miRNA:   3'- -UGGUCuCGG-----ACGGGUugUaCCG----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 74849 0.68 0.662203
Target:  5'- gGCUAaaGGCCUGUCCGGCcguccUGGCgACCCu -3'
miRNA:   3'- -UGGUc-UCGGACGGGUUGu----ACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 72514 0.68 0.702523
Target:  5'- gGCCugggGGAGcCCUGCgUCGGCGUGG-GCCCc -3'
miRNA:   3'- -UGG----UCUC-GGACG-GGUUGUACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 67834 0.68 0.712478
Target:  5'- gGCCAuuuGGGCC-GCCCcGCAgaaaguccGCACCCa -3'
miRNA:   3'- -UGGU---CUCGGaCGGGuUGUac------CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 127059 0.68 0.712478
Target:  5'- uCCGGGGCCcgGCCCuGCu--GCugCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGGuUGuacCGugGG- -5'
5539 5' -58.2 NC_001806.1 + 119922 0.68 0.712478
Target:  5'- gACCGaGGCCUGCgCCGcagaacGCGUcGuGCGCCCc -3'
miRNA:   3'- -UGGUcUCGGACG-GGU------UGUA-C-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 112374 0.68 0.712478
Target:  5'- cACCAcGGCCacgcaGCCCucCGUGGCcguGCCCc -3'
miRNA:   3'- -UGGUcUCGGa----CGGGuuGUACCG---UGGG- -5'
5539 5' -58.2 NC_001806.1 + 52083 0.68 0.703521
Target:  5'- gACCGGGGUCccagcggcacgaccgGCuCCAugcaguGCAUGGCGCUCa -3'
miRNA:   3'- -UGGUCUCGGa--------------CG-GGU------UGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 27090 0.68 0.702523
Target:  5'- gGCCcgcGGAGCCgGCCCGGCGaacucGGUcuaacguuacACCCg -3'
miRNA:   3'- -UGG---UCUCGGaCGGGUUGUa----CCG----------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 3460 0.69 0.63168
Target:  5'- gGCCAcgcGGCCgGCCUgGGCGcGGCGCCCg -3'
miRNA:   3'- -UGGUc--UCGGaCGGG-UUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 78242 0.69 0.638809
Target:  5'- cCCGGGGCCucaUGUUCGGCAcgcggcuggcagacUGGCGCCg -3'
miRNA:   3'- uGGUCUCGG---ACGGGUUGU--------------ACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 149748 0.69 0.641865
Target:  5'- --uGGcGCCc-CCCAAUAUGGCGCCCc -3'
miRNA:   3'- uggUCuCGGacGGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 96513 0.69 0.641865
Target:  5'- aACgGGGGcCCUGCcacuCCGGCGccgcccgccccUGGCGCCCc -3'
miRNA:   3'- -UGgUCUC-GGACG----GGUUGU-----------ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149560 0.69 0.652041
Target:  5'- gUCAGGGgguuCCgcacccCCUAACAUGGCGCCCc -3'
miRNA:   3'- uGGUCUC----GGac----GGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 75567 0.69 0.63168
Target:  5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3'
miRNA:   3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 22321 0.69 0.652041
Target:  5'- gACCAG-GCCUGCuuCCGGaucUcgGGCGCCg -3'
miRNA:   3'- -UGGUCuCGGACG--GGUU---GuaCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.