Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5539 | 5' | -58.2 | NC_001806.1 | + | 146218 | 1.1 | 0.001334 |
Target: 5'- cACCAGAGCCUGCCCAACAUGGCACCCc -3' miRNA: 3'- -UGGUCUCGGACGGGUUGUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 73551 | 0.88 | 0.042779 |
Target: 5'- cGCCuGAGCCUGgCCGACGUGGCcGCCCa -3' miRNA: 3'- -UGGuCUCGGACgGGUUGUACCG-UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 82517 | 0.83 | 0.098006 |
Target: 5'- gGCCgguguAGGGCUUGCCCAGucccgcCAUGGCGCCCg -3' miRNA: 3'- -UGG-----UCUCGGACGGGUU------GUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 73079 | 0.8 | 0.152233 |
Target: 5'- uCCGGAGCCUGUCCucGCcucGGCACCCc -3' miRNA: 3'- uGGUCUCGGACGGGu-UGua-CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 72671 | 0.78 | 0.205654 |
Target: 5'- aACCAGAgGCCaagcGCCCgAAUcgGGCGCCCg -3' miRNA: 3'- -UGGUCU-CGGa---CGGG-UUGuaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 67359 | 0.77 | 0.23235 |
Target: 5'- gAUCAGGGCC-GCCCccccgcGCAUGGUGCCCc -3' miRNA: 3'- -UGGUCUCGGaCGGGu-----UGUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 149716 | 0.76 | 0.287695 |
Target: 5'- uCgGGGGUCc-CCCAACAUGGCGCCCc -3' miRNA: 3'- uGgUCUCGGacGGGUUGUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 54791 | 0.75 | 0.322686 |
Target: 5'- cACCAGGGCCaGCCCG--GUGGCAUUg -3' miRNA: 3'- -UGGUCUCGGaCGGGUugUACCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 132727 | 0.74 | 0.337546 |
Target: 5'- cCCGcGAGCUgGCCCGGCGUGGC-CUCg -3' miRNA: 3'- uGGU-CUCGGaCGGGUUGUACCGuGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 56299 | 0.74 | 0.352898 |
Target: 5'- cGCCGGAGCCccagcaccUGCgCCAACGaaauccacacGGCACCCc -3' miRNA: 3'- -UGGUCUCGG--------ACG-GGUUGUa---------CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 23434 | 0.74 | 0.352898 |
Target: 5'- gGCCcGAGCCcgcccccGCCCAGCccgcGGCGCCCc -3' miRNA: 3'- -UGGuCUCGGa------CGGGUUGua--CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 9662 | 0.74 | 0.359966 |
Target: 5'- cGCCAGGcacGCCUGCgCCAACA-GGUcauacacGCCCa -3' miRNA: 3'- -UGGUCU---CGGACG-GGUUGUaCCG-------UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 23190 | 0.74 | 0.376023 |
Target: 5'- aACCAGAGCCUGCgCCcccugcuGGCGgcGGCGgCCa -3' miRNA: 3'- -UGGUCUCGGACG-GG-------UUGUa-CCGUgGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 24629 | 0.73 | 0.396763 |
Target: 5'- cGCUGGGGCCUgggcgcgccgcugcgGCCCGuguACGUGGCGCUg -3' miRNA: 3'- -UGGUCUCGGA---------------CGGGU---UGUACCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22049 | 0.73 | 0.401848 |
Target: 5'- --gGGAGCCgugGCCCGGCGccgGGCcCCCg -3' miRNA: 3'- uggUCUCGGa--CGGGUUGUa--CCGuGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 59617 | 0.73 | 0.419097 |
Target: 5'- cGCCGGGGCCUugggGcCCCGGCcgGGUACUUc -3' miRNA: 3'- -UGGUCUCGGA----C-GGGUUGuaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 41209 | 0.73 | 0.427889 |
Target: 5'- aGCCAGAGCCccgcGCCUAAaGUGGC-CCa -3' miRNA: 3'- -UGGUCUCGGa---CGGGUUgUACCGuGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 131588 | 0.72 | 0.4549 |
Target: 5'- cACCGG-GCCcgGCCaggcacggCAGCAUGGgACCCa -3' miRNA: 3'- -UGGUCuCGGa-CGG--------GUUGUACCgUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 73993 | 0.72 | 0.464108 |
Target: 5'- gGCCGGGGCg-GCCCcGCAgggGGCuccgcGCCCa -3' miRNA: 3'- -UGGUCUCGgaCGGGuUGUa--CCG-----UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 4026 | 0.72 | 0.472477 |
Target: 5'- gAUCAGGGCguaCUgcugcgcggcgucGCCCAGCucgGGCGCCCa -3' miRNA: 3'- -UGGUCUCG---GA-------------CGGGUUGua-CCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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