Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5539 | 5' | -58.2 | NC_001806.1 | + | 1414 | 0.66 | 0.788919 |
Target: 5'- cCCGuGGCCgagGCCCAGCGaaucccgggcGGCGCCg -3' miRNA: 3'- uGGUcUCGGa--CGGGUUGUa---------CCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 1737 | 0.68 | 0.702523 |
Target: 5'- cGCCGGcAGCacgGCCCGGC--GGUACUCg -3' miRNA: 3'- -UGGUC-UCGga-CGGGUUGuaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 2249 | 0.71 | 0.521242 |
Target: 5'- gGCCAGGGCCg--CCAGCA-GGCaggacaGCCCg -3' miRNA: 3'- -UGGUCUCGGacgGGUUGUaCCG------UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 2759 | 0.68 | 0.692509 |
Target: 5'- gGCCAcggggcgcgggcGGGCCUGCgCCGcgGCGgcccggGGCGCCg -3' miRNA: 3'- -UGGU------------CUCGGACG-GGU--UGUa-----CCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 3460 | 0.69 | 0.63168 |
Target: 5'- gGCCAcgcGGCCgGCCUgGGCGcGGCGCCCg -3' miRNA: 3'- -UGGUc--UCGGaCGGG-UUGUaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 4026 | 0.72 | 0.472477 |
Target: 5'- gAUCAGGGCguaCUgcugcgcggcgucGCCCAGCucgGGCGCCCa -3' miRNA: 3'- -UGGUCUCG---GA-------------CGGGUUGua-CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 4285 | 0.71 | 0.521242 |
Target: 5'- cGCCGGGG-CUGCCCGGcCGUGaaGCgGCCCg -3' miRNA: 3'- -UGGUCUCgGACGGGUU-GUAC--CG-UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 4329 | 0.67 | 0.732176 |
Target: 5'- gGCCAccGCCgcgcggGCCCGGC--GGCGCUCg -3' miRNA: 3'- -UGGUcuCGGa-----CGGGUUGuaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 4746 | 0.66 | 0.788919 |
Target: 5'- gGCCGGGGCCcggucGCCggCGGCGUcGGCugCg -3' miRNA: 3'- -UGGUCUCGGa----CGG--GUUGUA-CCGugGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 5867 | 0.66 | 0.797939 |
Target: 5'- cGCCGGAcGCCgggaCCAACGggacggcgGGCgGCCCa -3' miRNA: 3'- -UGGUCU-CGGacg-GGUUGUa-------CCG-UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 6046 | 0.67 | 0.770469 |
Target: 5'- cACUGGcGCCgUGCCCGACuccGCGCCg -3' miRNA: 3'- -UGGUCuCGG-ACGGGUUGuacCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 9662 | 0.74 | 0.359966 |
Target: 5'- cGCCAGGcacGCCUGCgCCAACA-GGUcauacacGCCCa -3' miRNA: 3'- -UGGUCU---CGGACG-GGUUGUaCCG-------UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 12436 | 0.68 | 0.682445 |
Target: 5'- cACCAGGcCCUGCaacgggCGGCAcGGCAUCCc -3' miRNA: 3'- -UGGUCUcGGACGg-----GUUGUaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 12764 | 0.66 | 0.80681 |
Target: 5'- gACCAGGG-CUGCCaggaGAC-UGcCGCCCa -3' miRNA: 3'- -UGGUCUCgGACGGg---UUGuACcGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 20184 | 0.67 | 0.751531 |
Target: 5'- cCCGGGGCCggcgcggaGUCgGGCAcGGCGCCa -3' miRNA: 3'- uGGUCUCGGa-------CGGgUUGUaCCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22049 | 0.73 | 0.401848 |
Target: 5'- --gGGAGCCgugGCCCGGCGccgGGCcCCCg -3' miRNA: 3'- uggUCUCGGa--CGGGUUGUa--CCGuGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22159 | 0.69 | 0.63168 |
Target: 5'- cGCCGGuucgaGGCCUcgggcGcCCCGGCGgccgugugGGCGCCCg -3' miRNA: 3'- -UGGUC-----UCGGA-----C-GGGUUGUa-------CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22321 | 0.69 | 0.652041 |
Target: 5'- gACCAG-GCCUGCuuCCGGaucUcgGGCGCCg -3' miRNA: 3'- -UGGUCuCGGACG--GGUU---GuaCCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22773 | 0.68 | 0.682445 |
Target: 5'- cGCCGGGcGCCgcGCCCAggccggccGCGUGGCcgucgaguGCCUg -3' miRNA: 3'- -UGGUCU-CGGa-CGGGU--------UGUACCG--------UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22890 | 0.7 | 0.540905 |
Target: 5'- gGCCGGGGCCcgGCCCGccagccccccGCGgccggaGGgACCCg -3' miRNA: 3'- -UGGUCUCGGa-CGGGU----------UGUa-----CCgUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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