miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 1414 0.66 0.788919
Target:  5'- cCCGuGGCCgagGCCCAGCGaaucccgggcGGCGCCg -3'
miRNA:   3'- uGGUcUCGGa--CGGGUUGUa---------CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 1737 0.68 0.702523
Target:  5'- cGCCGGcAGCacgGCCCGGC--GGUACUCg -3'
miRNA:   3'- -UGGUC-UCGga-CGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 2249 0.71 0.521242
Target:  5'- gGCCAGGGCCg--CCAGCA-GGCaggacaGCCCg -3'
miRNA:   3'- -UGGUCUCGGacgGGUUGUaCCG------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 2759 0.68 0.692509
Target:  5'- gGCCAcggggcgcgggcGGGCCUGCgCCGcgGCGgcccggGGCGCCg -3'
miRNA:   3'- -UGGU------------CUCGGACG-GGU--UGUa-----CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 3460 0.69 0.63168
Target:  5'- gGCCAcgcGGCCgGCCUgGGCGcGGCGCCCg -3'
miRNA:   3'- -UGGUc--UCGGaCGGG-UUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 4026 0.72 0.472477
Target:  5'- gAUCAGGGCguaCUgcugcgcggcgucGCCCAGCucgGGCGCCCa -3'
miRNA:   3'- -UGGUCUCG---GA-------------CGGGUUGua-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 4285 0.71 0.521242
Target:  5'- cGCCGGGG-CUGCCCGGcCGUGaaGCgGCCCg -3'
miRNA:   3'- -UGGUCUCgGACGGGUU-GUAC--CG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 4329 0.67 0.732176
Target:  5'- gGCCAccGCCgcgcggGCCCGGC--GGCGCUCg -3'
miRNA:   3'- -UGGUcuCGGa-----CGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 4746 0.66 0.788919
Target:  5'- gGCCGGGGCCcggucGCCggCGGCGUcGGCugCg -3'
miRNA:   3'- -UGGUCUCGGa----CGG--GUUGUA-CCGugGg -5'
5539 5' -58.2 NC_001806.1 + 5867 0.66 0.797939
Target:  5'- cGCCGGAcGCCgggaCCAACGggacggcgGGCgGCCCa -3'
miRNA:   3'- -UGGUCU-CGGacg-GGUUGUa-------CCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 6046 0.67 0.770469
Target:  5'- cACUGGcGCCgUGCCCGACuccGCGCCg -3'
miRNA:   3'- -UGGUCuCGG-ACGGGUUGuacCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 9662 0.74 0.359966
Target:  5'- cGCCAGGcacGCCUGCgCCAACA-GGUcauacacGCCCa -3'
miRNA:   3'- -UGGUCU---CGGACG-GGUUGUaCCG-------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 12436 0.68 0.682445
Target:  5'- cACCAGGcCCUGCaacgggCGGCAcGGCAUCCc -3'
miRNA:   3'- -UGGUCUcGGACGg-----GUUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 12764 0.66 0.80681
Target:  5'- gACCAGGG-CUGCCaggaGAC-UGcCGCCCa -3'
miRNA:   3'- -UGGUCUCgGACGGg---UUGuACcGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 20184 0.67 0.751531
Target:  5'- cCCGGGGCCggcgcggaGUCgGGCAcGGCGCCa -3'
miRNA:   3'- uGGUCUCGGa-------CGGgUUGUaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 22049 0.73 0.401848
Target:  5'- --gGGAGCCgugGCCCGGCGccgGGCcCCCg -3'
miRNA:   3'- uggUCUCGGa--CGGGUUGUa--CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 22159 0.69 0.63168
Target:  5'- cGCCGGuucgaGGCCUcgggcGcCCCGGCGgccgugugGGCGCCCg -3'
miRNA:   3'- -UGGUC-----UCGGA-----C-GGGUUGUa-------CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 22321 0.69 0.652041
Target:  5'- gACCAG-GCCUGCuuCCGGaucUcgGGCGCCg -3'
miRNA:   3'- -UGGUCuCGGACG--GGUU---GuaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 22773 0.68 0.682445
Target:  5'- cGCCGGGcGCCgcGCCCAggccggccGCGUGGCcgucgaguGCCUg -3'
miRNA:   3'- -UGGUCU-CGGa-CGGGU--------UGUACCG--------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 22890 0.7 0.540905
Target:  5'- gGCCGGGGCCcgGCCCGccagccccccGCGgccggaGGgACCCg -3'
miRNA:   3'- -UGGUCUCGGa-CGGGU----------UGUa-----CCgUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.