miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 151285 0.65 0.821527
Target:  5'- gGCCGGGGCCgggggGCggCGGCGgugggccgggccucUGGCGCCg -3'
miRNA:   3'- -UGGUCUCGGa----CGg-GUUGU--------------ACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 23190 0.74 0.376023
Target:  5'- aACCAGAGCCUGCgCCcccugcuGGCGgcGGCGgCCa -3'
miRNA:   3'- -UGGUCUCGGACG-GG-------UUGUa-CCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 24629 0.73 0.396763
Target:  5'- cGCUGGGGCCUgggcgcgccgcugcgGCCCGuguACGUGGCGCUg -3'
miRNA:   3'- -UGGUCUCGGA---------------CGGGU---UGUACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 22049 0.73 0.401848
Target:  5'- --gGGAGCCgugGCCCGGCGccgGGCcCCCg -3'
miRNA:   3'- uggUCUCGGa--CGGGUUGUa--CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 59617 0.73 0.419097
Target:  5'- cGCCGGGGCCUugggGcCCCGGCcgGGUACUUc -3'
miRNA:   3'- -UGGUCUCGGA----C-GGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 41209 0.73 0.427889
Target:  5'- aGCCAGAGCCccgcGCCUAAaGUGGC-CCa -3'
miRNA:   3'- -UGGUCUCGGa---CGGGUUgUACCGuGGg -5'
5539 5' -58.2 NC_001806.1 + 131588 0.72 0.4549
Target:  5'- cACCGG-GCCcgGCCaggcacggCAGCAUGGgACCCa -3'
miRNA:   3'- -UGGUCuCGGa-CGG--------GUUGUACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 73993 0.72 0.464108
Target:  5'- gGCCGGGGCg-GCCCcGCAgggGGCuccgcGCCCa -3'
miRNA:   3'- -UGGUCUCGgaCGGGuUGUa--CCG-----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 4026 0.72 0.472477
Target:  5'- gAUCAGGGCguaCUgcugcgcggcgucGCCCAGCucgGGCGCCCa -3'
miRNA:   3'- -UGGUCUCG---GA-------------CGGGUUGua-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 9662 0.74 0.359966
Target:  5'- cGCCAGGcacGCCUGCgCCAACA-GGUcauacacGCCCa -3'
miRNA:   3'- -UGGUCU---CGGACG-GGUUGUaCCG-------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 56299 0.74 0.352898
Target:  5'- cGCCGGAGCCccagcaccUGCgCCAACGaaauccacacGGCACCCc -3'
miRNA:   3'- -UGGUCUCGG--------ACG-GGUUGUa---------CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23434 0.74 0.352898
Target:  5'- gGCCcGAGCCcgcccccGCCCAGCccgcGGCGCCCc -3'
miRNA:   3'- -UGGuCUCGGa------CGGGUUGua--CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 73551 0.88 0.042779
Target:  5'- cGCCuGAGCCUGgCCGACGUGGCcGCCCa -3'
miRNA:   3'- -UGGuCUCGGACgGGUUGUACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 82517 0.83 0.098006
Target:  5'- gGCCgguguAGGGCUUGCCCAGucccgcCAUGGCGCCCg -3'
miRNA:   3'- -UGG-----UCUCGGACGGGUU------GUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 73079 0.8 0.152233
Target:  5'- uCCGGAGCCUGUCCucGCcucGGCACCCc -3'
miRNA:   3'- uGGUCUCGGACGGGu-UGua-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 72671 0.78 0.205654
Target:  5'- aACCAGAgGCCaagcGCCCgAAUcgGGCGCCCg -3'
miRNA:   3'- -UGGUCU-CGGa---CGGG-UUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 67359 0.77 0.23235
Target:  5'- gAUCAGGGCC-GCCCccccgcGCAUGGUGCCCc -3'
miRNA:   3'- -UGGUCUCGGaCGGGu-----UGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149716 0.76 0.287695
Target:  5'- uCgGGGGUCc-CCCAACAUGGCGCCCc -3'
miRNA:   3'- uGgUCUCGGacGGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 54791 0.75 0.322686
Target:  5'- cACCAGGGCCaGCCCG--GUGGCAUUg -3'
miRNA:   3'- -UGGUCUCGGaCGGGUugUACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 132727 0.74 0.337546
Target:  5'- cCCGcGAGCUgGCCCGGCGUGGC-CUCg -3'
miRNA:   3'- uGGU-CUCGGaCGGGUUGUACCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.