miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 26622 0.66 0.77976
Target:  5'- gGCCGGAcaGCCccccGCCCGAgccGGCGCCa -3'
miRNA:   3'- -UGGUCU--CGGa---CGGGUUguaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 64901 0.66 0.77976
Target:  5'- gACCAGcGCCgGCCUcuGGCGUcGGCGCg- -3'
miRNA:   3'- -UGGUCuCGGaCGGG--UUGUA-CCGUGgg -5'
5539 5' -58.2 NC_001806.1 + 71336 0.66 0.778836
Target:  5'- aGCCGGAgGCCUaugggcacgGCCCAcgccaggcggaccGCGagggGGCGCCUc -3'
miRNA:   3'- -UGGUCU-CGGA---------CGGGU-------------UGUa---CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 30942 0.67 0.774201
Target:  5'- cGCUA---CCUGCCCAucucgggggucucuaGCGUGGuCGCCCu -3'
miRNA:   3'- -UGGUcucGGACGGGU---------------UGUACC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 6046 0.67 0.770469
Target:  5'- cACUGGcGCCgUGCCCGACuccGCGCCg -3'
miRNA:   3'- -UGGUCuCGG-ACGGGUUGuacCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 73457 0.67 0.770469
Target:  5'- gGCCGGgguGGCCgGCCCGGCcgc-CGCCCu -3'
miRNA:   3'- -UGGUC---UCGGaCGGGUUGuaccGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23831 0.67 0.770469
Target:  5'- cGCCucGGGCCcgcUGCgCC-GCAUGGCGgCCu -3'
miRNA:   3'- -UGGu-CUCGG---ACG-GGuUGUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 93004 0.67 0.770469
Target:  5'- cGCCAGcugcaaccuGCUgcgGCCCGuCAUGGCggcgcGCCCc -3'
miRNA:   3'- -UGGUCu--------CGGa--CGGGUuGUACCG-----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 139429 0.67 0.770469
Target:  5'- cCCAGGGCCUuaGCCUgGACAaGGuCGCCa -3'
miRNA:   3'- uGGUCUCGGA--CGGG-UUGUaCC-GUGGg -5'
5539 5' -58.2 NC_001806.1 + 88996 0.67 0.767658
Target:  5'- gGCCAGaAGCC-GCCCGacccgacgcggaggACGUcGCGCUCg -3'
miRNA:   3'- -UGGUC-UCGGaCGGGU--------------UGUAcCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 98146 0.67 0.761057
Target:  5'- cCCGGGGCCUGCUaCAGCc--GCcCCCu -3'
miRNA:   3'- uGGUCUCGGACGG-GUUGuacCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 34409 0.67 0.761057
Target:  5'- gGCCGG-GCCggGCCgGGCcgGGCcggGCCg -3'
miRNA:   3'- -UGGUCuCGGa-CGGgUUGuaCCG---UGGg -5'
5539 5' -58.2 NC_001806.1 + 117690 0.67 0.761057
Target:  5'- aGCuCGGGGCCcgaGCCCG-CGUcGGCcCCCu -3'
miRNA:   3'- -UG-GUCUCGGa--CGGGUuGUA-CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 92506 0.67 0.760109
Target:  5'- uCCAGAgcGCCUaccagaaGCCCGACAagcgcgUGGaCAUCCu -3'
miRNA:   3'- uGGUCU--CGGA-------CGGGUUGU------ACC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 124896 0.67 0.752488
Target:  5'- cGCCGGAcuucGCCcugGCCCugcucgccuaucgcuGCGUGcuGCACCCa -3'
miRNA:   3'- -UGGUCU----CGGa--CGGGu--------------UGUAC--CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 134927 0.67 0.751531
Target:  5'- cCCGGcgauGGCCUGCUUgaggAugGUGGCGgCCg -3'
miRNA:   3'- uGGUC----UCGGACGGG----UugUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 67184 0.67 0.751531
Target:  5'- cCCAG-GCCUcGCCCAGCcgcucGGuCugCCg -3'
miRNA:   3'- uGGUCuCGGA-CGGGUUGua---CC-GugGG- -5'
5539 5' -58.2 NC_001806.1 + 20184 0.67 0.751531
Target:  5'- cCCGGGGCCggcgcggaGUCgGGCAcGGCGCCa -3'
miRNA:   3'- uGGUCUCGGa-------CGGgUUGUaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 67402 0.67 0.742868
Target:  5'- uCCAGGGCCUGUUCggUAUcgucguugggggucaGCGCCCc -3'
miRNA:   3'- uGGUCUCGGACGGGuuGUAc--------------CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 132759 0.67 0.741901
Target:  5'- aGCCGGAuGCCuccUGCCCGcggugcgggagGCGguggcgcggUGGCAUCCc -3'
miRNA:   3'- -UGGUCU-CGG---ACGGGU-----------UGU---------ACCGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.