miRNA: 3'- gUCCAG-----UCAG-GCCCgCCCGu--CCGCGa -5'
miRNA: 3'- -GUCCAguca-------GGCCCGCC-CGUCCgCGa -5'
miRNA: 3'- gUCCAGUCa---------GGCCCGCccGUCCGCGa -5'
miRNA: 3'- -GUC-CAGU-CAGGCC-CG--CCCGuCCGCGA- -5'
miRNA: 3'- -GUCCAGUCAGGCCCGCCCGUCCGCGA- -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5540 | 3' | -64.1 | NC_001806.1 | + | 151102 | 0.68 | 0.432743 |
|
Target: 5'- gGGGUCgcgggGGUCgCGGG-GGGCuccGGCGCc -3' miRNA: 3'- gUCCAG-----UCAG-GCCCgCCCGu--CCGCGa -5' |
|||||||
| 5540 | 3' | -64.1 | NC_001806.1 | + | 100372 | 0.69 | 0.386564 |
|
Target: 5'- aCAGGUagcucccgucgCCGGGCGGcGCGGGgGCc -3' miRNA: 3'- -GUCCAguca-------GGCCCGCC-CGUCCgCGa -5' |
|||||||
| 5540 | 3' | -64.1 | NC_001806.1 | + | 100722 | 0.69 | 0.375537 |
|
Target: 5'- uGGGUCAGcgccuccacgCCGGGCGccCAGGUGCg -3' miRNA: 3'- gUCCAGUCa---------GGCCCGCccGUCCGCGa -5' |
|||||||
| 5540 | 3' | -64.1 | NC_001806.1 | + | 42640 | 0.69 | 0.375537 |
|
Target: 5'- gCGGcGUCGcGUCCGGuGCggGGGCuGGCGUUg -3' miRNA: 3'- -GUC-CAGU-CAGGCC-CG--CCCGuCCGCGA- -5' |
|||||||
| 5540 | 3' | -64.1 | NC_001806.1 | + | 146079 | 1.06 | 0.000853 |
|
Target: 5'- cCAGGUCAGUCCGGGCGGGCAGGCGCUc -3' miRNA: 3'- -GUCCAGUCAGGCCCGCCCGUCCGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home