miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 3' -64.1 NC_001806.1 + 4427 0.69 0.375537
Target:  5'- gGGGU-GGcCCGGGCGGGgGcGGCGUc -3'
miRNA:   3'- gUCCAgUCaGGCCCGCCCgU-CCGCGa -5'
5540 3' -64.1 NC_001806.1 + 3526 0.69 0.345223
Target:  5'- gGGGUC-GUCgccccccgCGGGgGaGGCGGGCGCg -3'
miRNA:   3'- gUCCAGuCAG--------GCCCgC-CCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 2726 0.75 0.157883
Target:  5'- gGGGUCGGggCCcucGGCGGGCcGGCGCg -3'
miRNA:   3'- gUCCAGUCa-GGc--CCGCCCGuCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 2641 0.67 0.485601
Target:  5'- gCGGGgagCAGuaggccUCCaGGGCGGcggccGCGGGCGCc -3'
miRNA:   3'- -GUCCa--GUC------AGG-CCCGCC-----CGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 794 0.66 0.54134
Target:  5'- uCAGGUCAGagauccaaacccUCCGGG-GGcGCccGCGCa -3'
miRNA:   3'- -GUCCAGUC------------AGGCCCgCC-CGucCGCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.