Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5540 | 3' | -64.1 | NC_001806.1 | + | 4427 | 0.69 | 0.375537 |
Target: 5'- gGGGU-GGcCCGGGCGGGgGcGGCGUc -3' miRNA: 3'- gUCCAgUCaGGCCCGCCCgU-CCGCGa -5' |
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5540 | 3' | -64.1 | NC_001806.1 | + | 3526 | 0.69 | 0.345223 |
Target: 5'- gGGGUC-GUCgccccccgCGGGgGaGGCGGGCGCg -3' miRNA: 3'- gUCCAGuCAG--------GCCCgC-CCGUCCGCGa -5' |
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5540 | 3' | -64.1 | NC_001806.1 | + | 2726 | 0.75 | 0.157883 |
Target: 5'- gGGGUCGGggCCcucGGCGGGCcGGCGCg -3' miRNA: 3'- gUCCAGUCa-GGc--CCGCCCGuCCGCGa -5' |
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5540 | 3' | -64.1 | NC_001806.1 | + | 2641 | 0.67 | 0.485601 |
Target: 5'- gCGGGgagCAGuaggccUCCaGGGCGGcggccGCGGGCGCc -3' miRNA: 3'- -GUCCa--GUC------AGG-CCCGCC-----CGUCCGCGa -5' |
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5540 | 3' | -64.1 | NC_001806.1 | + | 794 | 0.66 | 0.54134 |
Target: 5'- uCAGGUCAGagauccaaacccUCCGGG-GGcGCccGCGCa -3' miRNA: 3'- -GUCCAGUC------------AGGCCCgCC-CGucCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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