Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5540 | 5' | -53.5 | NC_001806.1 | + | 149762 | 0.71 | 0.728054 |
Target: 5'- aUGGCGCCCcagacaugGCGCCCGGCCCcucaccucgcGCUGg- -3' miRNA: 3'- aAUUGUGGG--------UGUGGGUUGGG----------UGACac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 149639 | 0.67 | 0.924846 |
Target: 5'- aUGGCGCCCcaacaugGCGCCCGGCUC-CcGUGu -3' miRNA: 3'- aAUUGUGGG-------UGUGGGUUGGGuGaCAC- -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 146114 | 1.07 | 0.005678 |
Target: 5'- cUUAACACCCACACCCAACCCACUGUGg -3' miRNA: 3'- -AAUUGUGGGUGUGGGUUGGGUGACAC- -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 145447 | 0.66 | 0.945629 |
Target: 5'- gUAACccCCCACGCCaauGACCCACg--- -3' miRNA: 3'- aAUUGu-GGGUGUGGg--UUGGGUGacac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 144310 | 0.67 | 0.936024 |
Target: 5'- -cGACACCCcCcCCCcGCCCG-UGUGg -3' miRNA: 3'- aaUUGUGGGuGuGGGuUGGGUgACAC- -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 143955 | 0.68 | 0.872859 |
Target: 5'- ---cCGCCCACGCCCccGCCC-CUGc- -3' miRNA: 3'- aauuGUGGGUGUGGGu-UGGGuGACac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 143908 | 0.7 | 0.814848 |
Target: 5'- ---cCACCCAC-CCCAcgccCCCACUGa- -3' miRNA: 3'- aauuGUGGGUGuGGGUu---GGGUGACac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 136042 | 0.67 | 0.930841 |
Target: 5'- -cGGCACCgGcCACCCcgcGCUCGCUGUc -3' miRNA: 3'- aaUUGUGGgU-GUGGGu--UGGGUGACAc -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 135785 | 0.65 | 0.960783 |
Target: 5'- -cGGCGCCCGCccccccugguccugGCCCGcagACCCgcgGCUGUu -3' miRNA: 3'- aaUUGUGGGUG--------------UGGGU---UGGG---UGACAc -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 130146 | 0.66 | 0.940471 |
Target: 5'- -aGugGCCCGCGcaguucuCCCAggucacaaACCUGCUGUGu -3' miRNA: 3'- aaUugUGGGUGU-------GGGU--------UGGGUGACAC- -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 125573 | 0.74 | 0.612944 |
Target: 5'- -gGGCACCCACGCCCGcgACCCGg---- -3' miRNA: 3'- aaUUGUGGGUGUGGGU--UGGGUgacac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 121594 | 0.67 | 0.925403 |
Target: 5'- --cGC-CCCACAUcgauuccgCCAACgCACUGUGg -3' miRNA: 3'- aauUGuGGGUGUG--------GGUUGgGUGACAC- -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 119295 | 0.67 | 0.91971 |
Target: 5'- -gGGCGCCCGCagACCC-GCCCAUcGUc -3' miRNA: 3'- aaUUGUGGGUG--UGGGuUGGGUGaCAc -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 118623 | 0.7 | 0.805785 |
Target: 5'- --cACACCCACACCCAcCCC-Cg--- -3' miRNA: 3'- aauUGUGGGUGUGGGUuGGGuGacac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 118580 | 0.69 | 0.832433 |
Target: 5'- ----aACCCACGCCCuuCCCGCg--- -3' miRNA: 3'- aauugUGGGUGUGGGuuGGGUGacac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 114204 | 0.69 | 0.832433 |
Target: 5'- --cGCACCCccuGCACCCGGCCaauCUgGUGg -3' miRNA: 3'- aauUGUGGG---UGUGGGUUGGgu-GA-CAC- -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 113974 | 0.73 | 0.634083 |
Target: 5'- -cAACACCCAgGCCCGAgCCGCg--- -3' miRNA: 3'- aaUUGUGGGUgUGGGUUgGGUGacac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 113544 | 0.68 | 0.907562 |
Target: 5'- --uGCGCCCugGCCCGGCUCG-UGg- -3' miRNA: 3'- aauUGUGGGugUGGGUUGGGUgACac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 113138 | 0.67 | 0.919127 |
Target: 5'- -gAACGCCUgggggcaGCGCCUGGCCCACgGg- -3' miRNA: 3'- aaUUGUGGG-------UGUGGGUUGGGUGaCac -5' |
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5540 | 5' | -53.5 | NC_001806.1 | + | 111939 | 0.69 | 0.849241 |
Target: 5'- -cGACgGCCCGCACCCcaucgagcAACCCACa--- -3' miRNA: 3'- aaUUG-UGGGUGUGGG--------UUGGGUGacac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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