miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5541 3' -49.8 NC_001806.1 + 13926 0.69 0.980098
Target:  5'- cCCCugCUUUuuaaAGaCAGACUUUGUUAUa -3'
miRNA:   3'- -GGGugGGAA----UCaGUCUGAGACAAUGa -5'
5541 3' -49.8 NC_001806.1 + 32669 0.67 0.995208
Target:  5'- gCCCACCCgcgAGUggcguggccgaccuUAGcCUCUGggGCg -3'
miRNA:   3'- -GGGUGGGaa-UCA--------------GUCuGAGACaaUGa -5'
5541 3' -49.8 NC_001806.1 + 59522 0.68 0.984246
Target:  5'- aCCACgCCUUAGUUAGGCcgauccgCaGUUACa -3'
miRNA:   3'- gGGUG-GGAAUCAGUCUGa------GaCAAUGa -5'
5541 3' -49.8 NC_001806.1 + 70951 0.66 0.996096
Target:  5'- -gCGCCCUUGGUCAG-CUCg---GCc -3'
miRNA:   3'- ggGUGGGAAUCAGUCuGAGacaaUGa -5'
5541 3' -49.8 NC_001806.1 + 132836 0.68 0.986056
Target:  5'- aCCCGCCCgcggccGUCGGGCccgUCUGgacgGCg -3'
miRNA:   3'- -GGGUGGGaau---CAGUCUG---AGACaa--UGa -5'
5541 3' -49.8 NC_001806.1 + 145291 0.66 0.997196
Target:  5'- gCCACUCgcgGGU-GGGCUCgUGUUACa -3'
miRNA:   3'- gGGUGGGaa-UCAgUCUGAG-ACAAUGa -5'
5541 3' -49.8 NC_001806.1 + 145345 1.1 0.010555
Target:  5'- uCCCACCCUUAGUCAGACUCUGUUACUu -3'
miRNA:   3'- -GGGUGGGAAUCAGUCUGAGACAAUGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.