miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5541 5' -51.7 NC_001806.1 + 104762 0.66 0.987318
Target:  5'- aCGCCGuuCUGgCUCCUcaUAUCgGGGGGa -3'
miRNA:   3'- gGUGGUu-GACgGGGGA--AUAGaUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 105351 0.67 0.97737
Target:  5'- cCCGCCGGCUGCCgggacgCCCUgcugcaacuUAcCUccGGGa -3'
miRNA:   3'- -GGUGGUUGACGG------GGGA---------AUaGAuuCCC- -5'
5541 5' -51.7 NC_001806.1 + 109212 0.7 0.921431
Target:  5'- cCCACC-ACaGCUCCCUUAgcguGGGGc -3'
miRNA:   3'- -GGUGGuUGaCGGGGGAAUagauUCCC- -5'
5541 5' -51.7 NC_001806.1 + 112997 0.66 0.985666
Target:  5'- -gACCGugUGCCaCCCUUcgCUGAu-- -3'
miRNA:   3'- ggUGGUugACGG-GGGAAuaGAUUccc -5'
5541 5' -51.7 NC_001806.1 + 119200 0.73 0.813461
Target:  5'- cCCGCCGgccgcgaaggaggcuGCgGCCCaCCUguccauggGUCUGGGGGa -3'
miRNA:   3'- -GGUGGU---------------UGaCGGG-GGAa-------UAGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 119957 0.71 0.896704
Target:  5'- cCCACCAGCUGUCuCCCg---CUGGGcaGGc -3'
miRNA:   3'- -GGUGGUUGACGG-GGGaauaGAUUC--CC- -5'
5541 5' -51.7 NC_001806.1 + 120798 0.7 0.91562
Target:  5'- gCGCCGuugGCCCCCgccUCUGGGGu -3'
miRNA:   3'- gGUGGUugaCGGGGGaauAGAUUCCc -5'
5541 5' -51.7 NC_001806.1 + 126788 0.66 0.99018
Target:  5'- uCC-CCGACUGCCCCCcccacccgcAUCUGGu-- -3'
miRNA:   3'- -GGuGGUUGACGGGGGaa-------UAGAUUccc -5'
5541 5' -51.7 NC_001806.1 + 144946 0.69 0.937365
Target:  5'- aCCGCCAACggccgGCCCCCguggCggcccggcccGGGGc -3'
miRNA:   3'- -GGUGGUUGa----CGGGGGaauaGau--------UCCC- -5'
5541 5' -51.7 NC_001806.1 + 145382 1.13 0.004586
Target:  5'- aCCACCAACUGCCCCCUUAUCUAAGGGc -3'
miRNA:   3'- -GGUGGUUGACGGGGGAAUAGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 148427 0.7 0.909561
Target:  5'- cUCACCGugUGCCCCCccaggGUCagguaccgcGGGGc -3'
miRNA:   3'- -GGUGGUugACGGGGGaa---UAGau-------UCCC- -5'
5541 5' -51.7 NC_001806.1 + 148505 0.73 0.822285
Target:  5'- cCCGCCcuGACgGCCUCCUcggccuccaugcggGUCUGGGGGu -3'
miRNA:   3'- -GGUGG--UUGaCGGGGGAa-------------UAGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 149114 0.66 0.99018
Target:  5'- cCCGCCucacaaagucCUGCCCCCcug-CUggccucggaaGAGGGg -3'
miRNA:   3'- -GGUGGuu--------GACGGGGGaauaGA----------UUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.