Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5542 | 5' | -67.5 | NC_001806.1 | + | 30041 | 0.69 | 0.253399 |
Target: 5'- -gGCCGaggGGC-CggaCGGGCCCCCUUGu -3' miRNA: 3'- caCGGCg--CCGaGag-GCCCGGGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 65456 | 0.69 | 0.247785 |
Target: 5'- aUGCCGCGGCcC-CCGGGUCCugggggcgCCCg- -3' miRNA: 3'- cACGGCGCCGaGaGGCCCGGG--------GGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 68463 | 0.69 | 0.247785 |
Target: 5'- -gGUgGUGGCUCUCCccgaGGCCCCCg-- -3' miRNA: 3'- caCGgCGCCGAGAGGc---CCGGGGGgac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 76820 | 0.69 | 0.247785 |
Target: 5'- -gGCCaGCGGCgacggC-CCGGGCCUCCUa- -3' miRNA: 3'- caCGG-CGCCGa----GaGGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 57050 | 0.69 | 0.24723 |
Target: 5'- -gGCCGgggccccCGGCUgCgugCCGGGCUCCCCg- -3' miRNA: 3'- caCGGC-------GCCGA-Ga--GGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 5831 | 0.7 | 0.226357 |
Target: 5'- -cGcCCGuUGGCcgUCcCCGGGCCCCCCg- -3' miRNA: 3'- caC-GGC-GCCG--AGaGGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 111660 | 0.7 | 0.224303 |
Target: 5'- aUGCCGCGGCcauggugccgaCCGGGUCCCuCCUu -3' miRNA: 3'- cACGGCGCCGaga--------GGCCCGGGG-GGAc -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 19205 | 0.7 | 0.216244 |
Target: 5'- -aGCCGCaGGUUUacCCGGGCCCgCUUGg -3' miRNA: 3'- caCGGCG-CCGAGa-GGCCCGGGgGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 30160 | 0.7 | 0.216244 |
Target: 5'- aUGCCa-GGCUCcgccccccgccCCGGGCCCCCCg- -3' miRNA: 3'- cACGGcgCCGAGa----------GGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 30646 | 0.7 | 0.211334 |
Target: 5'- -gGgCGCGGCcagggugggC-CCGGGaCCCCCCUGa -3' miRNA: 3'- caCgGCGCCGa--------GaGGCCC-GGGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 17155 | 0.7 | 0.20652 |
Target: 5'- -cGCUGcCGGUcgCUCCaaGGGCCCCCCc- -3' miRNA: 3'- caCGGC-GCCGa-GAGG--CCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 151113 | 0.7 | 0.20652 |
Target: 5'- -gGUCGCGGggggCUCCGGcGCCCCCUc- -3' miRNA: 3'- caCGGCGCCga--GAGGCC-CGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 66745 | 0.7 | 0.20652 |
Target: 5'- -cGCCGCGc----CCGGGCCCCCCa- -3' miRNA: 3'- caCGGCGCcgagaGGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 25841 | 0.71 | 0.199015 |
Target: 5'- cGUGCUcuguugguuucaccuGUGGCagC-CCGGGCCCCCCg- -3' miRNA: 3'- -CACGG---------------CGCCGa-GaGGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 26974 | 0.71 | 0.197177 |
Target: 5'- -cGCCGCGGCUCg-UGGGCCCgCgaGc -3' miRNA: 3'- caCGGCGCCGAGagGCCCGGGgGgaC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 74865 | 0.72 | 0.163415 |
Target: 5'- -gGCCGUccuGGCgaccCUgCGGGCCUCCCUGc -3' miRNA: 3'- caCGGCG---CCGa---GAgGCCCGGGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 147283 | 0.72 | 0.154717 |
Target: 5'- -gGCCGCcgaggacgucagggGGgUC-CCGGGCCCaCCCUGg -3' miRNA: 3'- caCGGCG--------------CCgAGaGGCCCGGG-GGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 20648 | 0.72 | 0.152154 |
Target: 5'- -gGCCGCGGCca--CGGGCCCCCg-- -3' miRNA: 3'- caCGGCGCCGagagGCCCGGGGGgac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 144830 | 0.73 | 0.138236 |
Target: 5'- -cGaCCGCGGCggUCCGGGCCCCguCCg- -3' miRNA: 3'- caC-GGCGCCGagAGGCCCGGGG--GGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 126882 | 0.73 | 0.128574 |
Target: 5'- -cGCCGgGGCUCUCgGGGCCgcaggaCCCa- -3' miRNA: 3'- caCGGCgCCGAGAGgCCCGGg-----GGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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