miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 3' -54.2 NC_001806.1 + 144073 1.1 0.003821
Target:  5'- gGGGGAUGGAAGGACGGGAAGUGGAAGu -3'
miRNA:   3'- -CCCCUACCUUCCUGCCCUUCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 6414 0.86 0.141617
Target:  5'- cGGaGGAgGGggGGACGcGGggGUGGAGGa -3'
miRNA:   3'- -CC-CCUaCCuuCCUGC-CCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 32020 0.84 0.197109
Target:  5'- gGGGGGUGGGgcggagGGGugGGGggGgGGGAGa -3'
miRNA:   3'- -CCCCUACCU------UCCugCCCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 71532 0.82 0.234274
Target:  5'- cGGGcgGGcGGGGgGGGggGUGGAAGa -3'
miRNA:   3'- cCCCuaCCuUCCUgCCCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 11800 0.82 0.258051
Target:  5'- cGGGGAUGGu-GGuCGaGGggGUGGAGGu -3'
miRNA:   3'- -CCCCUACCuuCCuGC-CCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 145552 0.8 0.304351
Target:  5'- gGGGGAgugcggGGGAGGGgGGGu-GUGGAAGg -3'
miRNA:   3'- -CCCCUa-----CCUUCCUgCCCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 35012 0.8 0.333555
Target:  5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3'
miRNA:   3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 34978 0.8 0.333555
Target:  5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3'
miRNA:   3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 34944 0.8 0.333555
Target:  5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3'
miRNA:   3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 34894 0.8 0.333555
Target:  5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3'
miRNA:   3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 25352 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25301 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25250 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25199 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25148 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25097 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 10392 0.78 0.397925
Target:  5'- gGGGGcgGGggGaGGCGGGAGccGGggGg -3'
miRNA:   3'- -CCCCuaCCuuC-CUGCCCUUcaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 29638 0.78 0.406514
Target:  5'- gGGGGAggaggaggaGGAGGGGgGGGGAG-GGAGGa -3'
miRNA:   3'- -CCCCUa--------CCUUCCUgCCCUUCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 55590 0.78 0.424923
Target:  5'- cGGGGGUGGAcgugggggggcuuuuGGGCGuGGAGGUGGGc- -3'
miRNA:   3'- -CCCCUACCUu--------------CCUGC-CCUUCACCUuc -5'
5543 3' -54.2 NC_001806.1 + 46811 0.77 0.432963
Target:  5'- cGGGGAccgGGAcugGGuGGCGGGggGUGGGu- -3'
miRNA:   3'- -CCCCUa--CCU---UC-CUGCCCuuCACCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.