Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5543 | 3' | -54.2 | NC_001806.1 | + | 38812 | 0.66 | 0.962933 |
Target: 5'- cGGGGAccc--GGGCGGG-GGUGGAu- -3' miRNA: 3'- -CCCCUaccuuCCUGCCCuUCACCUuc -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 25199 | 0.78 | 0.396221 |
Target: 5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3' miRNA: 3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 25250 | 0.78 | 0.396221 |
Target: 5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3' miRNA: 3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 25301 | 0.78 | 0.396221 |
Target: 5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3' miRNA: 3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 25352 | 0.78 | 0.396221 |
Target: 5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3' miRNA: 3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 10392 | 0.78 | 0.397925 |
Target: 5'- gGGGGcgGGggGaGGCGGGAGccGGggGg -3' miRNA: 3'- -CCCCuaCCuuC-CUGCCCUUcaCCuuC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 29638 | 0.78 | 0.406514 |
Target: 5'- gGGGGAggaggaggaGGAGGGGgGGGGAG-GGAGGa -3' miRNA: 3'- -CCCCUa--------CCUUCCUgCCCUUCaCCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 55590 | 0.78 | 0.424923 |
Target: 5'- cGGGGGUGGAcgugggggggcuuuuGGGCGuGGAGGUGGGc- -3' miRNA: 3'- -CCCCUACCUu--------------CCUGC-CCUUCACCUuc -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 43979 | 0.77 | 0.432963 |
Target: 5'- uGGGAUGGAGGGGCGGGu-GUGa--- -3' miRNA: 3'- cCCCUACCUUCCUGCCCuuCACcuuc -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 25148 | 0.78 | 0.396221 |
Target: 5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3' miRNA: 3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 25097 | 0.78 | 0.396221 |
Target: 5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3' miRNA: 3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 35012 | 0.8 | 0.333555 |
Target: 5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3' miRNA: 3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 6414 | 0.86 | 0.141617 |
Target: 5'- cGGaGGAgGGggGGACGcGGggGUGGAGGa -3' miRNA: 3'- -CC-CCUaCCuuCCUGC-CCuuCACCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 32020 | 0.84 | 0.197109 |
Target: 5'- gGGGGGUGGGgcggagGGGugGGGggGgGGGAGa -3' miRNA: 3'- -CCCCUACCU------UCCugCCCuuCaCCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 71532 | 0.82 | 0.234274 |
Target: 5'- cGGGcgGGcGGGGgGGGggGUGGAAGa -3' miRNA: 3'- cCCCuaCCuUCCUgCCCuuCACCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 11800 | 0.82 | 0.258051 |
Target: 5'- cGGGGAUGGu-GGuCGaGGggGUGGAGGu -3' miRNA: 3'- -CCCCUACCuuCCuGC-CCuuCACCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 145552 | 0.8 | 0.304351 |
Target: 5'- gGGGGAgugcggGGGAGGGgGGGu-GUGGAAGg -3' miRNA: 3'- -CCCCUa-----CCUUCCUgCCCuuCACCUUC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 34894 | 0.8 | 0.333555 |
Target: 5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3' miRNA: 3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 34944 | 0.8 | 0.333555 |
Target: 5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3' miRNA: 3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5' |
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5543 | 3' | -54.2 | NC_001806.1 | + | 34978 | 0.8 | 0.333555 |
Target: 5'- aGGGGAgagGGggGGAgaGGGGAGaGGggGg -3' miRNA: 3'- -CCCCUa--CCuuCCUg-CCCUUCaCCuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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