miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 3' -54.2 NC_001806.1 + 15289 0.67 0.932958
Target:  5'- gGGGGuguGUGGucGGGCGugguaaggcugauGGcGGUGGGAGa -3'
miRNA:   3'- -CCCC---UACCuuCCUGC-------------CCuUCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 28668 0.67 0.930399
Target:  5'- gGGGGGUgGGGAGGAgccgcccgccauauuUGGGGGacgccGUGGGAc -3'
miRNA:   3'- -CCCCUA-CCUUCCU---------------GCCCUU-----CACCUUc -5'
5543 3' -54.2 NC_001806.1 + 6079 0.67 0.928307
Target:  5'- gGGGGcgGGcccGGGcGGCGGGggGcGGGu- -3'
miRNA:   3'- -CCCCuaCC---UUC-CUGCCCuuCaCCUuc -5'
5543 3' -54.2 NC_001806.1 + 52586 0.67 0.928307
Target:  5'- cGGcccgGGggGGcaucgcGCGGGggGUGGGAc -3'
miRNA:   3'- cCCcua-CCuuCC------UGCCCuuCACCUUc -5'
5543 3' -54.2 NC_001806.1 + 4425 0.67 0.922911
Target:  5'- gGGGGGUGGcccGGGCGGGGGcggcGUccgcccGGggGc -3'
miRNA:   3'- -CCCCUACCuu-CCUGCCCUU----CA------CCuuC- -5'
5543 3' -54.2 NC_001806.1 + 151091 0.67 0.922911
Target:  5'- cGGGGGUcGcGggGGuCGcGGggGUcgcGGggGg -3'
miRNA:   3'- -CCCCUA-C-CuuCCuGC-CCuuCA---CCuuC- -5'
5543 3' -54.2 NC_001806.1 + 95351 0.68 0.917849
Target:  5'- cGGGGAccgugucgccguagaGGAAGGggcACGGGGGuUGGGAGc -3'
miRNA:   3'- -CCCCUa--------------CCUUCC---UGCCCUUcACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 30416 0.68 0.917274
Target:  5'- cGGGGG-GGccGGGCGuGGAGgGUGGGc- -3'
miRNA:   3'- -CCCCUaCCuuCCUGC-CCUU-CACCUuc -5'
5543 3' -54.2 NC_001806.1 + 34370 0.68 0.916697
Target:  5'- cGGGGcUGGGuaucccgAGGugGGuGGGUGGgcGg -3'
miRNA:   3'- -CCCCuACCU-------UCCugCCcUUCACCuuC- -5'
5543 3' -54.2 NC_001806.1 + 11315 0.68 0.916697
Target:  5'- uGGGGUGGGugucgugGGGuccACGGGggGcgucGGAAGc -3'
miRNA:   3'- cCCCUACCU-------UCC---UGCCCuuCa---CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 65290 0.68 0.913777
Target:  5'- cGGGGA-GG-AGGAgGGGGgcccccaagggccucGGUGGGGa -3'
miRNA:   3'- -CCCCUaCCuUCCUgCCCU---------------UCACCUUc -5'
5543 3' -54.2 NC_001806.1 + 103421 0.68 0.911397
Target:  5'- uGGGGAcaagaUGGggGGugGGauGAGG-GGGc- -3'
miRNA:   3'- -CCCCU-----ACCuuCCugCC--CUUCaCCUuc -5'
5543 3' -54.2 NC_001806.1 + 34294 0.68 0.911397
Target:  5'- cGGGAUGGGguuuAGcGGCGGGggGcGGc-- -3'
miRNA:   3'- cCCCUACCU----UC-CUGCCCuuCaCCuuc -5'
5543 3' -54.2 NC_001806.1 + 30636 0.68 0.905282
Target:  5'- aGGGccGGggGGGCGcGGccaGGGUGGGc- -3'
miRNA:   3'- cCCCuaCCuuCCUGC-CC---UUCACCUuc -5'
5543 3' -54.2 NC_001806.1 + 143330 0.68 0.892346
Target:  5'- aGGGGggGGggGGGCGcuGGuuGGUcaaaaaagGGAGGg -3'
miRNA:   3'- -CCCCuaCCuuCCUGC--CCu-UCA--------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 34432 0.68 0.892346
Target:  5'- cGGGccGGguGGGCGGGGuuUGGAAa -3'
miRNA:   3'- cCCCuaCCuuCCUGCCCUucACCUUc -5'
5543 3' -54.2 NC_001806.1 + 15403 0.68 0.892346
Target:  5'- uGGGuGGUGGAGGaGACGuu-GGUGGGAa -3'
miRNA:   3'- -CCC-CUACCUUC-CUGCccuUCACCUUc -5'
5543 3' -54.2 NC_001806.1 + 29682 0.69 0.871229
Target:  5'- cGGGcGA-GGaAAGGGCGGGccGgGGAGGg -3'
miRNA:   3'- -CCC-CUaCC-UUCCUGCCCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 133823 0.69 0.863752
Target:  5'- cGGGGugcuggcgGGAguauGGGGCGaGGggG-GGAAGu -3'
miRNA:   3'- -CCCCua------CCU----UCCUGC-CCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 86028 0.69 0.863752
Target:  5'- cGGGGAgGGcAGGGccGCGGGggG-GGcGGg -3'
miRNA:   3'- -CCCCUaCC-UUCC--UGCCCuuCaCCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.