Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5544 | 3' | -62 | NC_001806.1 | + | 144828 | 0.71 | 0.390175 |
Target: 5'- cCCGaccGCGGCGGu-CCGGGccCCGUCCGg -3' miRNA: 3'- -GGC---CGCCGUCuuGGCCCcaGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 146842 | 0.71 | 0.382276 |
Target: 5'- gCGGCGGCuccAGCCGGGGaCCGcggCCc -3' miRNA: 3'- gGCCGCCGuc-UUGGCCCCaGGCa--GGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 147211 | 0.77 | 0.173806 |
Target: 5'- cCCGGCGGCGGAagaggcggcccccGCgGGGGUCgGggCCGa -3' miRNA: 3'- -GGCCGCCGUCU-------------UGgCCCCAGgCa-GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 147890 | 0.66 | 0.672755 |
Target: 5'- -gGGgGGCGGGucuguugACaagGGGGcCCGUCCGg -3' miRNA: 3'- ggCCgCCGUCU-------UGg--CCCCaGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 148165 | 0.68 | 0.547462 |
Target: 5'- gCGGCGGCgccucugcgugggGGGGCgCGGGG--CGUCCGg -3' miRNA: 3'- gGCCGCCG-------------UCUUG-GCCCCagGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 150486 | 0.7 | 0.45617 |
Target: 5'- gCCGGaaGCGGGaagggcgGCCGGGG-CCGcCCAu -3' miRNA: 3'- -GGCCgcCGUCU-------UGGCCCCaGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 150947 | 0.66 | 0.673719 |
Target: 5'- cCCGGCGcCGGAACCGagcccGGUCgGcCCGc -3' miRNA: 3'- -GGCCGCcGUCUUGGCc----CCAGgCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 151272 | 0.68 | 0.586626 |
Target: 5'- gCCgGGCGGUgGGGGCCGGGG-CCGg--- -3' miRNA: 3'- -GG-CCGCCG-UCUUGGCCCCaGGCaggu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 151300 | 0.7 | 0.448346 |
Target: 5'- gCGGCGGCGGuggGCCGGGccUCUGgcgCCGg -3' miRNA: 3'- gGCCGCCGUCu--UGGCCCc-AGGCa--GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 151451 | 0.68 | 0.548409 |
Target: 5'- gCGGCGGCGGGgcgGCCGcGGG-CgCGcUCCu -3' miRNA: 3'- gGCCGCCGUCU---UGGC-CCCaG-GC-AGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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