miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 27278 0.66 0.673719
Target:  5'- aUCGGCGGCcgccAGcGCggCGGGGcCCGgCCAa -3'
miRNA:   3'- -GGCCGCCG----UCuUG--GCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 24537 0.66 0.692918
Target:  5'- gCCgGGCGGCGGccUCGGGGaccaCCGacgCCAu -3'
miRNA:   3'- -GG-CCGCCGUCuuGGCCCCa---GGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 23937 0.84 0.061293
Target:  5'- gCCGGCGGCGGGGCCuGGGGgggCCG-CCGg -3'
miRNA:   3'- -GGCCGCCGUCUUGG-CCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 23552 0.72 0.330033
Target:  5'- gCGGCGGCAGcccCCGGGGcCCaG-CCAc -3'
miRNA:   3'- gGCCGCCGUCuu-GGCCCCaGG-CaGGU- -5'
5544 3' -62 NC_001806.1 + 23055 0.68 0.567436
Target:  5'- gCCGGCGGCAGcgaggccGCCGuGG-CCG-CCGu -3'
miRNA:   3'- -GGCCGCCGUCu------UGGCcCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 22869 0.72 0.358474
Target:  5'- cCUGGCGGCcgucccgGGGcugGCCGGGGcCCGgcccgCCAg -3'
miRNA:   3'- -GGCCGCCG-------UCU---UGGCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 21740 0.66 0.657301
Target:  5'- gCGGCcgaccacgcacgcgaGGCGcGGGCCgucgggcGGGGUCCGUCgAg -3'
miRNA:   3'- gGCCG---------------CCGU-CUUGG-------CCCCAGGCAGgU- -5'
5544 3' -62 NC_001806.1 + 21323 0.7 0.465831
Target:  5'- gCCGGCGa-GGAcGCCGGGGacgCCGUCUc -3'
miRNA:   3'- -GGCCGCcgUCU-UGGCCCCa--GGCAGGu -5'
5544 3' -62 NC_001806.1 + 20991 0.72 0.344407
Target:  5'- aCGGCGGgGGucgUCGGGGUCCGUg-- -3'
miRNA:   3'- gGCCGCCgUCuu-GGCCCCAGGCAggu -5'
5544 3' -62 NC_001806.1 + 20616 0.73 0.296057
Target:  5'- gCGGaugGGCGGGGCCgGGGGUUCGaCCAa -3'
miRNA:   3'- gGCCg--CCGUCUUGG-CCCCAGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 20393 0.81 0.08966
Target:  5'- uCCGGCgGGCGGGACCGGGGggcCCGgggacggCCAa -3'
miRNA:   3'- -GGCCG-CCGUCUUGGCCCCa--GGCa------GGU- -5'
5544 3' -62 NC_001806.1 + 19888 0.71 0.382276
Target:  5'- aCCGGUGGguuucugucguCGGAGgcccCCGGGGUgCGUCCc -3'
miRNA:   3'- -GGCCGCC-----------GUCUU----GGCCCCAgGCAGGu -5'
5544 3' -62 NC_001806.1 + 18376 0.66 0.683338
Target:  5'- -aGGCGGUGGAGaagcgcauuuuCCGGcagCCGUCCAg -3'
miRNA:   3'- ggCCGCCGUCUU-----------GGCCccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 17789 0.71 0.40629
Target:  5'- -gGGUGGgAGAACCGuGGG-CCGUgCCGa -3'
miRNA:   3'- ggCCGCCgUCUUGGC-CCCaGGCA-GGU- -5'
5544 3' -62 NC_001806.1 + 10686 0.67 0.644709
Target:  5'- cCCGGUcGCAGAugggGCCGGGGgggCGUacgCCAu -3'
miRNA:   3'- -GGCCGcCGUCU----UGGCCCCag-GCA---GGU- -5'
5544 3' -62 NC_001806.1 + 6076 0.67 0.604967
Target:  5'- cCCGGgGGCGGGcCCGggcggcggggggcGGGUCUcUCCGg -3'
miRNA:   3'- -GGCCgCCGUCUuGGC-------------CCCAGGcAGGU- -5'
5544 3' -62 NC_001806.1 + 5935 0.72 0.358474
Target:  5'- gCCGGCgGGCGGGACCgccccaagggggcGGGG-CCG-CCGg -3'
miRNA:   3'- -GGCCG-CCGUCUUGG-------------CCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 5105 0.66 0.683338
Target:  5'- gUCGGUggGGCccggGGAGCCGGGGcgcugcuuguucUCCGacgCCAu -3'
miRNA:   3'- -GGCCG--CCG----UCUUGGCCCC------------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 4830 0.68 0.548409
Target:  5'- -gGGCGGCGaGGCCgcGGGGUCgggcgucgggauCGUCCGg -3'
miRNA:   3'- ggCCGCCGUcUUGG--CCCCAG------------GCAGGU- -5'
5544 3' -62 NC_001806.1 + 4730 0.71 0.40629
Target:  5'- cCCGuucGCGGCcccGGGCCGGGGcCCGgucgCCGg -3'
miRNA:   3'- -GGC---CGCCGu--CUUGGCCCCaGGCa---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.