miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 142239 1.09 0.000981
Target:  5'- uCCGGCGGCAGAACCGGGGUCCGUCCAg -3'
miRNA:   3'- -GGCCGCCGUCUUGGCCCCAGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 23937 0.84 0.061293
Target:  5'- gCCGGCGGCGGGGCCuGGGGgggCCG-CCGg -3'
miRNA:   3'- -GGCCGCCGUCUUGG-CCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 20393 0.81 0.08966
Target:  5'- uCCGGCgGGCGGGACCGGGGggcCCGgggacggCCAa -3'
miRNA:   3'- -GGCCG-CCGUCUUGGCCCCa--GGCa------GGU- -5'
5544 3' -62 NC_001806.1 + 1447 0.8 0.117983
Target:  5'- gCCGGCGGCAGGGCCcccGGG-CCGUCg- -3'
miRNA:   3'- -GGCCGCCGUCUUGGc--CCCaGGCAGgu -5'
5544 3' -62 NC_001806.1 + 147211 0.77 0.173806
Target:  5'- cCCGGCGGCGGAagaggcggcccccGCgGGGGUCgGggCCGa -3'
miRNA:   3'- -GGCCGCCGUCU-------------UGgCCCCAGgCa-GGU- -5'
5544 3' -62 NC_001806.1 + 3309 0.75 0.225734
Target:  5'- gCGGCGGCGGGGaagcggggcCCGcGGGUCCcUCCGg -3'
miRNA:   3'- gGCCGCCGUCUU---------GGC-CCCAGGcAGGU- -5'
5544 3' -62 NC_001806.1 + 71650 0.74 0.264862
Target:  5'- -gGGUGGCGGAAacaacacuaaccCCgGGGGUCCgGUCCAu -3'
miRNA:   3'- ggCCGCCGUCUU------------GG-CCCCAGG-CAGGU- -5'
5544 3' -62 NC_001806.1 + 20616 0.73 0.296057
Target:  5'- gCGGaugGGCGGGGCCgGGGGUUCGaCCAa -3'
miRNA:   3'- gGCCg--CCGUCUUGG-CCCCAGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 23552 0.72 0.330033
Target:  5'- gCGGCGGCAGcccCCGGGGcCCaG-CCAc -3'
miRNA:   3'- gGCCGCCGUCuu-GGCCCCaGG-CaGGU- -5'
5544 3' -62 NC_001806.1 + 68587 0.72 0.344407
Target:  5'- gCGGCGGCccuGGGGCCGGuccgcGUCCG-CCAg -3'
miRNA:   3'- gGCCGCCG---UCUUGGCCc----CAGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 20991 0.72 0.344407
Target:  5'- aCGGCGGgGGucgUCGGGGUCCGUg-- -3'
miRNA:   3'- gGCCGCCgUCuu-GGCCCCAGGCAggu -5'
5544 3' -62 NC_001806.1 + 37922 0.72 0.351761
Target:  5'- aUGGgGGC---GCCGGGGccgUCCGUCCAc -3'
miRNA:   3'- gGCCgCCGucuUGGCCCC---AGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 5935 0.72 0.358474
Target:  5'- gCCGGCgGGCGGGACCgccccaagggggcGGGG-CCG-CCGg -3'
miRNA:   3'- -GGCCG-CCGUCUUGG-------------CCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 22869 0.72 0.358474
Target:  5'- cCUGGCGGCcgucccgGGGcugGCCGGGGcCCGgcccgCCAg -3'
miRNA:   3'- -GGCCGCCG-------UCU---UGGCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 96387 0.71 0.374484
Target:  5'- cCCGcGCGGgGGcGCCGGuGGUUCGUCg- -3'
miRNA:   3'- -GGC-CGCCgUCuUGGCC-CCAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 146842 0.71 0.382276
Target:  5'- gCGGCGGCuccAGCCGGGGaCCGcggCCc -3'
miRNA:   3'- gGCCGCCGuc-UUGGCCCCaGGCa--GGu -5'
5544 3' -62 NC_001806.1 + 19888 0.71 0.382276
Target:  5'- aCCGGUGGguuucugucguCGGAGgcccCCGGGGUgCGUCCc -3'
miRNA:   3'- -GGCCGCC-----------GUCUU----GGCCCCAgGCAGGu -5'
5544 3' -62 NC_001806.1 + 99573 0.71 0.390175
Target:  5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3'
miRNA:   3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 144828 0.71 0.390175
Target:  5'- cCCGaccGCGGCGGu-CCGGGccCCGUCCGg -3'
miRNA:   3'- -GGC---CGCCGUCuuGGCCCcaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 4658 0.71 0.403033
Target:  5'- gCGGCGGCuGGGCCGGcGGgcgcggcgacaggCgGUCCGu -3'
miRNA:   3'- gGCCGCCGuCUUGGCC-CCa------------GgCAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.