miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 5' -51.9 NC_001806.1 + 142273 1.12 0.004682
Target:  5'- cGUUGGUAGGUCCCAAAUCCUGUCGCCc -3'
miRNA:   3'- -CAACCAUCCAGGGUUUAGGACAGCGG- -5'
5544 5' -51.9 NC_001806.1 + 75061 0.66 0.983734
Target:  5'- -gUGGU-GGUgCUGAAgaaCCUGuUCGCCg -3'
miRNA:   3'- caACCAuCCAgGGUUUa--GGAC-AGCGG- -5'
5544 5' -51.9 NC_001806.1 + 30958 0.66 0.981731
Target:  5'- --cGG-GGGUCUCuagcguGGUcgcCCUGUCGCCu -3'
miRNA:   3'- caaCCaUCCAGGGu-----UUA---GGACAGCGG- -5'
5544 5' -51.9 NC_001806.1 + 15197 0.66 0.981731
Target:  5'- --gGGUgucacGGGUCCCAucUCCccccucaagaUGuUCGCCg -3'
miRNA:   3'- caaCCA-----UCCAGGGUuuAGG----------AC-AGCGG- -5'
5544 5' -51.9 NC_001806.1 + 102808 0.67 0.972975
Target:  5'- --cGGUaccAGGUCCCGaacaccacccccgacGAgCCgGUCGCCc -3'
miRNA:   3'- caaCCA---UCCAGGGU---------------UUaGGaCAGCGG- -5'
5544 5' -51.9 NC_001806.1 + 104195 0.67 0.971842
Target:  5'- --cGGcgcGGUCCCAGGUCCacuUCGCa -3'
miRNA:   3'- caaCCau-CCAGGGUUUAGGac-AGCGg -5'
5544 5' -51.9 NC_001806.1 + 106812 0.67 0.968239
Target:  5'- --aGG-AGGgcacgaacuacgCCCAGuUCCUGUCGCg -3'
miRNA:   3'- caaCCaUCCa-----------GGGUUuAGGACAGCGg -5'
5544 5' -51.9 NC_001806.1 + 84900 0.68 0.965661
Target:  5'- -gUGGUgcgucGGGccUCCCGGAagagCCUGcCGCCu -3'
miRNA:   3'- caACCA-----UCC--AGGGUUUa---GGACaGCGG- -5'
5544 5' -51.9 NC_001806.1 + 2687 0.68 0.950564
Target:  5'- -gUGGcUGGGcCCCGGGggCUGcCGCCg -3'
miRNA:   3'- caACC-AUCCaGGGUUUagGACaGCGG- -5'
5544 5' -51.9 NC_001806.1 + 147299 0.69 0.931578
Target:  5'- --aGGgGGGUCCCGGGcccacCCUGgccgCGCCc -3'
miRNA:   3'- caaCCaUCCAGGGUUUa----GGACa---GCGG- -5'
5544 5' -51.9 NC_001806.1 + 100620 0.69 0.926204
Target:  5'- --aGGUAGGuguguccggcgaUCCCGg--CCUGcCGCCg -3'
miRNA:   3'- caaCCAUCC------------AGGGUuuaGGACaGCGG- -5'
5544 5' -51.9 NC_001806.1 + 9807 0.69 0.920578
Target:  5'- --gGGUGGGcUCggCCAAAUCCg--CGCCg -3'
miRNA:   3'- caaCCAUCC-AG--GGUUUAGGacaGCGG- -5'
5544 5' -51.9 NC_001806.1 + 42858 0.72 0.834242
Target:  5'- -cUGGUGGGUCCCAcccacuUCC-GUCcCCa -3'
miRNA:   3'- caACCAUCCAGGGUuu----AGGaCAGcGG- -5'
5544 5' -51.9 NC_001806.1 + 26533 0.66 0.983734
Target:  5'- --cGGUGGGcCCCcgccuUCUUGUuCGCUg -3'
miRNA:   3'- caaCCAUCCaGGGuuu--AGGACA-GCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.