Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 13568 | 0.66 | 0.987711 |
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Target: 5'- uCCAAcacGGCGUaguaaaccgugaUCgGGAGGCUgGGGGGc -3' miRNA: 3'- -GGUU---CUGUA------------AGgCUUCUGAgCCCCCu -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 144020 | 0.66 | 0.986115 |
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Target: 5'- cCCAacGGAaagcggCGggGugUUGGGGGAg -3' miRNA: 3'- -GGU--UCUguaag-GCuuCugAGCCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 56664 | 0.66 | 0.986115 |
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Target: 5'- cCCGugGGAUcgUUgGggGG-UCGGGGGGg -3' miRNA: 3'- -GGU--UCUGuaAGgCuuCUgAGCCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 15952 | 0.66 | 0.986115 |
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Target: 5'- --cGGAUcc-CCGGccaGGACUCGGGGGc -3' miRNA: 3'- gguUCUGuaaGGCU---UCUGAGCCCCCu -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 117958 | 0.66 | 0.985434 |
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Target: 5'- cCCGAcGACAgcgacgccggucCCGGAGGCUCGGGu-- -3' miRNA: 3'- -GGUU-CUGUaa----------GGCUUCUGAGCCCccu -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 138550 | 0.66 | 0.985434 |
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Target: 5'- uUCGAGGCAguguugcgugaCGAcagcuuuguaaAGACUCaGGGGGAg -3' miRNA: 3'- -GGUUCUGUaag--------GCU-----------UCUGAG-CCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 53094 | 0.66 | 0.98037 |
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Target: 5'- aCGAGACGgugagCGAGGACg-GGGGGc -3' miRNA: 3'- gGUUCUGUaag--GCUUCUGagCCCCCu -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 72942 | 0.66 | 0.97971 |
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Target: 5'- aCCugGACuccgccuuccagcgUCGAAGACcugacuUCGGGGGAg -3' miRNA: 3'- -GGuuCUGuaa-----------GGCUUCUG------AGCCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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