miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5546 3' -53 NC_001806.1 + 34346 0.66 0.983052
Target:  5'- aACGGcCCCcggggaacggggGACCGGggCUGGguaucccgaGGUGGGu -3'
miRNA:   3'- -UGCCaGGG------------UUGGCUaaGAUC---------UCACCC- -5'
5546 3' -53 NC_001806.1 + 37963 0.66 0.976433
Target:  5'- -gGGUCCCccaggguugcGAUUGGUUCUGGGGgcacgccggcgGGGg -3'
miRNA:   3'- ugCCAGGG----------UUGGCUAAGAUCUCa----------CCC- -5'
5546 3' -53 NC_001806.1 + 121055 0.66 0.971076
Target:  5'- aACGGUCCUcACCGAgccUCUGugucaGGUGGc -3'
miRNA:   3'- -UGCCAGGGuUGGCUa--AGAUc----UCACCc -5'
5546 3' -53 NC_001806.1 + 15987 0.66 0.971076
Target:  5'- gAUGGUUCCGG-CGAUUCcgUAGGGgaaGGGg -3'
miRNA:   3'- -UGCCAGGGUUgGCUAAG--AUCUCa--CCC- -5'
5546 3' -53 NC_001806.1 + 67500 0.67 0.964895
Target:  5'- -gGGUCCCGACCcc--CUGGGGagcccUGGGc -3'
miRNA:   3'- ugCCAGGGUUGGcuaaGAUCUC-----ACCC- -5'
5546 3' -53 NC_001806.1 + 62601 0.67 0.96148
Target:  5'- cGCGGUCUUGaaucGCCGGag--GGGGUGGGu -3'
miRNA:   3'- -UGCCAGGGU----UGGCUaagaUCUCACCC- -5'
5546 3' -53 NC_001806.1 + 76910 0.68 0.940497
Target:  5'- -aGGUCUCucgaggaGGCCGAggC-GGAGUGGGa -3'
miRNA:   3'- ugCCAGGG-------UUGGCUaaGaUCUCACCC- -5'
5546 3' -53 NC_001806.1 + 132906 0.68 0.936152
Target:  5'- gGCGGcCCUGGCCGAccUCggggGGAGcGGGc -3'
miRNA:   3'- -UGCCaGGGUUGGCUa-AGa---UCUCaCCC- -5'
5546 3' -53 NC_001806.1 + 15374 0.68 0.931093
Target:  5'- -aGGga-CGACCGGUggUCUGGAGUuGGGg -3'
miRNA:   3'- ugCCaggGUUGGCUA--AGAUCUCA-CCC- -5'
5546 3' -53 NC_001806.1 + 20313 0.71 0.81845
Target:  5'- gGCGGUCCCGcccGCCGGccaaUGGGG-GGGc -3'
miRNA:   3'- -UGCCAGGGU---UGGCUaag-AUCUCaCCC- -5'
5546 3' -53 NC_001806.1 + 141466 1.11 0.004654
Target:  5'- aACGGUCCCAACCGAUUCUAGAGUGGGa -3'
miRNA:   3'- -UGCCAGGGUUGGCUAAGAUCUCACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.