miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5546 5' -60 NC_001806.1 + 151251 0.7 0.511069
Target:  5'- aGCCCCGCcccccgggcccacGCcgGGCGGUgGGGGcCGg -3'
miRNA:   3'- -CGGGGCG-------------CGaaCUGCCAgUCCCaGCa -5'
5546 5' -60 NC_001806.1 + 151063 0.7 0.512011
Target:  5'- cGCaCCCGCGC--GGgGGUCgcgGGGGUCGc -3'
miRNA:   3'- -CG-GGGCGCGaaCUgCCAG---UCCCAGCa -5'
5546 5' -60 NC_001806.1 + 149793 0.66 0.764081
Target:  5'- aCCUCGCGCUgggGGCGGcccUCAGGccggCGg -3'
miRNA:   3'- cGGGGCGCGAa--CUGCC---AGUCCca--GCa -5'
5546 5' -60 NC_001806.1 + 147229 0.67 0.678136
Target:  5'- gGCCCC-CGC--GGgGGUCGGGGcCGa -3'
miRNA:   3'- -CGGGGcGCGaaCUgCCAGUCCCaGCa -5'
5546 5' -60 NC_001806.1 + 144348 0.67 0.717041
Target:  5'- cGCCCCGCGC----CGGUCcauuaAGGGcgcgCGUg -3'
miRNA:   3'- -CGGGGCGCGaacuGCCAG-----UCCCa---GCA- -5'
5546 5' -60 NC_001806.1 + 141500 1.09 0.001286
Target:  5'- cGCCCCGCGCUUGACGGUCAGGGUCGUg -3'
miRNA:   3'- -CGGGGCGCGAACUGCCAGUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 139805 0.67 0.687935
Target:  5'- gGCaCCCGCGCgaucAUGGUaCGGGGcCGg -3'
miRNA:   3'- -CG-GGGCGCGaac-UGCCA-GUCCCaGCa -5'
5546 5' -60 NC_001806.1 + 133414 0.67 0.678136
Target:  5'- gGgCCCGCGUacaccacGGCGGcaGGGGUCGUa -3'
miRNA:   3'- -CgGGGCGCGaa-----CUGCCagUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 132695 0.72 0.430585
Target:  5'- uGgCCCGCGg-UGGgGGcCAGGGUCGUc -3'
miRNA:   3'- -CgGGGCGCgaACUgCCaGUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 88809 0.66 0.754859
Target:  5'- gGCCCaggaGCGUgUGACGGUCcccGUCGg -3'
miRNA:   3'- -CGGGg---CGCGaACUGCCAGuccCAGCa -5'
5546 5' -60 NC_001806.1 + 84233 0.67 0.707396
Target:  5'- gGCCaCCGUGCUgaaacACGGcCGGGGgcgCGg -3'
miRNA:   3'- -CGG-GGCGCGAac---UGCCaGUCCCa--GCa -5'
5546 5' -60 NC_001806.1 + 57405 0.68 0.648557
Target:  5'- aUCCCGCGCcuuggccgUGAUGGcacgCGGGGUgGUu -3'
miRNA:   3'- cGGGGCGCGa-------ACUGCCa---GUCCCAgCA- -5'
5546 5' -60 NC_001806.1 + 42010 0.75 0.267684
Target:  5'- uGCUCCGUGC-UGGCcgcggGGUUGGGGUCGUg -3'
miRNA:   3'- -CGGGGCGCGaACUG-----CCAGUCCCAGCA- -5'
5546 5' -60 NC_001806.1 + 41815 0.67 0.726618
Target:  5'- gGCCCCGCaauacGCgggGGCGGgcgUCAGGGcccCGg -3'
miRNA:   3'- -CGGGGCG-----CGaa-CUGCC---AGUCCCa--GCa -5'
5546 5' -60 NC_001806.1 + 41424 0.67 0.707396
Target:  5'- uGCCCaGCGCgccgUGGUCGGGGUgCGc -3'
miRNA:   3'- -CGGGgCGCGaacuGCCAGUCCCA-GCa -5'
5546 5' -60 NC_001806.1 + 41215 0.68 0.618867
Target:  5'- aGCCCCGCGCcuaaaGugGccCAGGGccUCGUg -3'
miRNA:   3'- -CGGGGCGCGaa---CugCcaGUCCC--AGCA- -5'
5546 5' -60 NC_001806.1 + 31357 0.76 0.261601
Target:  5'- cCCCCGUGUUUGugGGgaggggGGGGUCGg -3'
miRNA:   3'- cGGGGCGCGAACugCCag----UCCCAGCa -5'
5546 5' -60 NC_001806.1 + 29803 0.74 0.334848
Target:  5'- cGCCgCCGCGCcccccgUGACGGgCGGGG-CGUc -3'
miRNA:   3'- -CGG-GGCGCGa-----ACUGCCaGUCCCaGCA- -5'
5546 5' -60 NC_001806.1 + 24067 0.66 0.745536
Target:  5'- cGCCCCcgacgugucgGCGCUgGGCGcaCAGGG-CGUg -3'
miRNA:   3'- -CGGGG----------CGCGAaCUGCcaGUCCCaGCA- -5'
5546 5' -60 NC_001806.1 + 20979 0.69 0.559916
Target:  5'- aGUUCCGCGUc-GACGGcgGGGGUCGUc -3'
miRNA:   3'- -CGGGGCGCGaaCUGCCagUCCCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.