miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 3' -56.9 NC_001806.1 + 136737 0.66 0.871488
Target:  5'- cGAGGucCCGGUaagUGGUGGCGUUgaGGa -3'
miRNA:   3'- -CUCCcaGGCCGg--ACUACCGUAAgaCC- -5'
5547 3' -56.9 NC_001806.1 + 105583 0.66 0.856469
Target:  5'- cGGGGUUCGGUCccagGGcUGGCAcUCUGu -3'
miRNA:   3'- cUCCCAGGCCGGa---CU-ACCGUaAGACc -5'
5547 3' -56.9 NC_001806.1 + 122936 0.66 0.848655
Target:  5'- cAGGGaccaCGGUCUGGUGGCGc-UUGGg -3'
miRNA:   3'- cUCCCag--GCCGGACUACCGUaaGACC- -5'
5547 3' -56.9 NC_001806.1 + 65641 0.67 0.839835
Target:  5'- aGAGGGgccccggCGGCCUcccccugGGUGGCugcgCUGGg -3'
miRNA:   3'- -CUCCCag-----GCCGGA-------CUACCGuaa-GACC- -5'
5547 3' -56.9 NC_001806.1 + 67205 0.67 0.832451
Target:  5'- --cGGUcugCCGGCCUGGcggGGCGcgCUGGu -3'
miRNA:   3'- cucCCA---GGCCGGACUa--CCGUaaGACC- -5'
5547 3' -56.9 NC_001806.1 + 11836 0.67 0.80681
Target:  5'- aGGGGGUggaGGCCUGGUuaggGGCGggUUGGu -3'
miRNA:   3'- -CUCCCAgg-CCGGACUA----CCGUaaGACC- -5'
5547 3' -56.9 NC_001806.1 + 119488 0.67 0.80681
Target:  5'- cGGGcGUgCGGCCUG-UGGCGUugcaUCgGGg -3'
miRNA:   3'- cUCC-CAgGCCGGACuACCGUA----AGaCC- -5'
5547 3' -56.9 NC_001806.1 + 133462 0.68 0.797939
Target:  5'- -cGGGUCCugGGCCUGAcaacGGCAUgcgugCcGGa -3'
miRNA:   3'- cuCCCAGG--CCGGACUa---CCGUAa----GaCC- -5'
5547 3' -56.9 NC_001806.1 + 69605 0.68 0.788919
Target:  5'- cGAGGcGgUCGGCCUGucggggGGCGUUCUa- -3'
miRNA:   3'- -CUCC-CaGGCCGGACua----CCGUAAGAcc -5'
5547 3' -56.9 NC_001806.1 + 69658 0.68 0.788919
Target:  5'- -uGGGUCCGGCCgugccGAcGGaacaUCUGGc -3'
miRNA:   3'- cuCCCAGGCCGGa----CUaCCgua-AGACC- -5'
5547 3' -56.9 NC_001806.1 + 117365 0.68 0.77976
Target:  5'- cGGaGGUCCGGCCUGGgccgcgaGGUAga-UGGc -3'
miRNA:   3'- cUC-CCAGGCCGGACUa------CCGUaagACC- -5'
5547 3' -56.9 NC_001806.1 + 103708 0.68 0.751531
Target:  5'- uGGGGGUuuGGUCggcgGGUGGUAa-CUGGc -3'
miRNA:   3'- -CUCCCAggCCGGa---CUACCGUaaGACC- -5'
5547 3' -56.9 NC_001806.1 + 99639 0.69 0.712478
Target:  5'- uGGGGGcgguggCgGGCCUGGcgGGCAggcagCUGGg -3'
miRNA:   3'- -CUCCCa-----GgCCGGACUa-CCGUaa---GACC- -5'
5547 3' -56.9 NC_001806.1 + 31377 0.7 0.652041
Target:  5'- gGGGGGUCgGGCgCUgGGUGGUc-UCUGGc -3'
miRNA:   3'- -CUCCCAGgCCG-GA-CUACCGuaAGACC- -5'
5547 3' -56.9 NC_001806.1 + 141366 1.11 0.001665
Target:  5'- cGAGGGUCCGGCCUGAUGGCAUUCUGGg -3'
miRNA:   3'- -CUCCCAGGCCGGACUACCGUAAGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.