miRNA display CGI


Results 1 - 20 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 100380 0.66 0.931571
Target:  5'- cUCCCGucgccGGGCG---GCGCgGgGGCCGGGg -3'
miRNA:   3'- -GGGGU-----CUCGUauuUGUGgU-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 105696 0.66 0.936541
Target:  5'- gCCCAGGGCucgca-GCCAacGUCGGGg -3'
miRNA:   3'- gGGGUCUCGuauuugUGGUc-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 3221 0.66 0.936541
Target:  5'- uCCCCgcgcAGGcGCAUGAGCACCAGcGCg--- -3'
miRNA:   3'- -GGGG----UCU-CGUAUUUGUGGUC-CGgccc -5'
5547 5' -55.3 NC_001806.1 + 24494 0.66 0.931571
Target:  5'- uCCCCGcgcGAGUAc---CGCCGGGCCGu- -3'
miRNA:   3'- -GGGGU---CUCGUauuuGUGGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 26792 0.66 0.928475
Target:  5'- aCCgCGGAGCAccugGcgcgccugcgccugcGACGCgCGGGCgGGGa -3'
miRNA:   3'- -GGgGUCUCGUa---U---------------UUGUG-GUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 57806 0.66 0.920919
Target:  5'- gUCCAGGGgGacUGGAuCugCGGGCgGGGg -3'
miRNA:   3'- gGGGUCUCgU--AUUU-GugGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 147707 0.66 0.930549
Target:  5'- gCCCCGGAgGCGgcgcucgcacGCACgGGGCCacggccgcgcGGGg -3'
miRNA:   3'- -GGGGUCU-CGUauu-------UGUGgUCCGG----------CCC- -5'
5547 5' -55.3 NC_001806.1 + 117806 0.66 0.920919
Target:  5'- aCCCGGAcGCcgcgAAACGCCccgggaugcaGGGCCaGGa -3'
miRNA:   3'- gGGGUCU-CGua--UUUGUGG----------UCCGGcCC- -5'
5547 5' -55.3 NC_001806.1 + 89556 0.66 0.945774
Target:  5'- gCCCGGuuuauucGCGUcgGCccgGCC-GGCCGGGc -3'
miRNA:   3'- gGGGUCu------CGUAuuUG---UGGuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 32940 0.66 0.926364
Target:  5'- gCgCCGGGcCGUugugGGGCcCCGGGCCGGGn -3'
miRNA:   3'- -GgGGUCUcGUA----UUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 138808 0.66 0.931571
Target:  5'- cCCCCGgcGAGCGUGcguuugauuuuaAGCAacUgGGGCCGcGGg -3'
miRNA:   3'- -GGGGU--CUCGUAU------------UUGU--GgUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 67154 0.66 0.926364
Target:  5'- aCCCCAGGGCGgucGccuccaucagcuGGCcCCAGGCCu-- -3'
miRNA:   3'- -GGGGUCUCGUa--U------------UUGuGGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 51385 0.66 0.941275
Target:  5'- aCCCCGGAGgGgcuccuuAGCGC--GGCCGuGGg -3'
miRNA:   3'- -GGGGUCUCgUau-----UUGUGguCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 11875 0.66 0.926364
Target:  5'- uCgCCGGGGCc-AGACGCgGGGCCGa- -3'
miRNA:   3'- -GgGGUCUCGuaUUUGUGgUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 70754 0.66 0.924756
Target:  5'- gCCCGG-GCGUcgaagcugcugucgGGAgACCAGGuccCCGGGu -3'
miRNA:   3'- gGGGUCuCGUA--------------UUUgUGGUCC---GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 3104 0.66 0.926364
Target:  5'- gCCgCGGAGCu----CGgCAGGCgCGGGu -3'
miRNA:   3'- -GGgGUCUCGuauuuGUgGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 36835 0.66 0.920919
Target:  5'- aCCCAG-GCcgu-ACGCCGGGCCc-- -3'
miRNA:   3'- gGGGUCuCGuauuUGUGGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 142017 0.66 0.920919
Target:  5'- cCUCUAGGGCGgcgagGAGCGCC--GCCGGc -3'
miRNA:   3'- -GGGGUCUCGUa----UUUGUGGucCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 77484 0.66 0.931571
Target:  5'- aCCCgCAGAuGCu---GCGCC--GCCGGGg -3'
miRNA:   3'- -GGG-GUCU-CGuauuUGUGGucCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 55248 0.66 0.920919
Target:  5'- --aCGGAGgGUcgGCGcCCGGGCCGGc -3'
miRNA:   3'- gggGUCUCgUAuuUGU-GGUCCGGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.