Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5547 | 5' | -55.3 | NC_001806.1 | + | 141401 | 1.13 | 0.001982 |
Target: 5'- gCCCCAGAGCAUAAACACCAGGCCGGGg -3' miRNA: 3'- -GGGGUCUCGUAUUUGUGGUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 140120 | 0.81 | 0.235499 |
Target: 5'- cCCCCAGAGg--AGACGCCAGGCgCGGc -3' miRNA: 3'- -GGGGUCUCguaUUUGUGGUCCG-GCCc -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 101916 | 0.81 | 0.2531 |
Target: 5'- gCCCCGccuGGGCGUcaAGACacagggcgGCCAGGCCGGGa -3' miRNA: 3'- -GGGGU---CUCGUA--UUUG--------UGGUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 77100 | 0.8 | 0.278233 |
Target: 5'- -aCCAGGGCGUccugggcgccaaGAGCGCCgagcGGGCCGGGg -3' miRNA: 3'- ggGGUCUCGUA------------UUUGUGG----UCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 73440 | 0.78 | 0.334372 |
Target: 5'- gCCCGGAcGCAc--AC-CCAGGCCGGGg -3' miRNA: 3'- gGGGUCU-CGUauuUGuGGUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 121401 | 0.78 | 0.349643 |
Target: 5'- cCCCCGGAGCcgGGcgcgugcuGCGCCuuGGGCCcGGGg -3' miRNA: 3'- -GGGGUCUCGuaUU--------UGUGG--UCCGG-CCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 12419 | 0.77 | 0.389113 |
Target: 5'- aCCCAGAGgccCAcGAGCACCAGGCCcugcaacGGGc -3' miRNA: 3'- gGGGUCUC---GUaUUUGUGGUCCGG-------CCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 34516 | 0.77 | 0.398366 |
Target: 5'- gCCCGGGGgGUGGGaGCgCGGGCCGGGc -3' miRNA: 3'- gGGGUCUCgUAUUUgUG-GUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 33031 | 0.77 | 0.414677 |
Target: 5'- aCCCC-GAGUGUucaucucAGGCcCCGGGCCGGGa -3' miRNA: 3'- -GGGGuCUCGUA-------UUUGuGGUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 131975 | 0.76 | 0.424305 |
Target: 5'- gCCCUGGAGCGcc-AgACCGGGCCGGu -3' miRNA: 3'- -GGGGUCUCGUauuUgUGGUCCGGCCc -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 2936 | 0.76 | 0.424305 |
Target: 5'- gCCUCcGGGCGgccGgGCCGGGCCGGGa -3' miRNA: 3'- -GGGGuCUCGUauuUgUGGUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 147681 | 0.76 | 0.433174 |
Target: 5'- cCCCgGGGGCcgGGGCGCgGGGgCGGGc -3' miRNA: 3'- -GGGgUCUCGuaUUUGUGgUCCgGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 41104 | 0.76 | 0.451228 |
Target: 5'- -gCCGGAaccCAcGGACGCCGGGCCGGGc -3' miRNA: 3'- ggGGUCUc--GUaUUUGUGGUCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 93921 | 0.76 | 0.451228 |
Target: 5'- aCCCCGGGGCuca---GCCAGacGCCGGGu -3' miRNA: 3'- -GGGGUCUCGuauuugUGGUC--CGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 4179 | 0.76 | 0.460409 |
Target: 5'- cCCCgGGGGCGgGGGC-CCGGcGCCGGGc -3' miRNA: 3'- -GGGgUCUCGUaUUUGuGGUC-CGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 50644 | 0.75 | 0.479061 |
Target: 5'- gCCCGG-GCGUGcggggacgcGCACCGGcGCCGGGa -3' miRNA: 3'- gGGGUCuCGUAUu--------UGUGGUC-CGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 103946 | 0.75 | 0.488525 |
Target: 5'- aCgCGGAGCGUccguugggcgacAAACACCAGGaCGGGg -3' miRNA: 3'- gGgGUCUCGUA------------UUUGUGGUCCgGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 57017 | 0.75 | 0.498076 |
Target: 5'- gCCCAGugccaGGCAcugGGugGCCGGGCCcGGGg -3' miRNA: 3'- gGGGUC-----UCGUa--UUugUGGUCCGG-CCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 39183 | 0.75 | 0.511585 |
Target: 5'- gCCCCGGGGCGgcGGC-CUugucugcguucuuggGGGCCGGGc -3' miRNA: 3'- -GGGGUCUCGUauUUGuGG---------------UCCGGCCC- -5' |
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5547 | 5' | -55.3 | NC_001806.1 | + | 34381 | 0.75 | 0.517421 |
Target: 5'- aUCCCGagguggguggguGGGCGgcgGugGCCGGGCCGGGc -3' miRNA: 3'- -GGGGU------------CUCGUau-UugUGGUCCGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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