miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 1542 0.72 0.668585
Target:  5'- cCUCCGcGGCccgcgcCACCGGGCCGGGc -3'
miRNA:   3'- -GGGGUcUCGuauuu-GUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 1764 0.68 0.861508
Target:  5'- gCgCGGGGaCAUGGGCACCGGcguguCCGGGc -3'
miRNA:   3'- gGgGUCUC-GUAUUUGUGGUCc----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 2656 0.72 0.678717
Target:  5'- cCUCCAGGGCGgcggccgcGGGCGCCGccguguGGCUGGGc -3'
miRNA:   3'- -GGGGUCUCGUa-------UUUGUGGU------CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 2720 0.67 0.883332
Target:  5'- gCCCAGGGgGUcgGgGCCcucggcGGGCCGGc -3'
miRNA:   3'- gGGGUCUCgUAuuUgUGG------UCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 2793 0.7 0.748081
Target:  5'- gCCCGGGGCGccgcGgGCUGGGCgGGGg -3'
miRNA:   3'- gGGGUCUCGUauu-UgUGGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 2831 0.72 0.658423
Target:  5'- cCCCgGGGGCGUGgaggGGgGCgCGGGCgCGGGg -3'
miRNA:   3'- -GGGgUCUCGUAU----UUgUG-GUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 2936 0.76 0.424305
Target:  5'- gCCUCcGGGCGgccGgGCCGGGCCGGGa -3'
miRNA:   3'- -GGGGuCUCGUauuUgUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 3104 0.66 0.926364
Target:  5'- gCCgCGGAGCu----CGgCAGGCgCGGGu -3'
miRNA:   3'- -GGgGUCUCGuauuuGUgGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 3145 0.67 0.89017
Target:  5'- gCCCAGGGCcccGGCgACCAGGCucaCGGc -3'
miRNA:   3'- gGGGUCUCGuauUUG-UGGUCCG---GCCc -5'
5547 5' -55.3 NC_001806.1 + 3221 0.66 0.936541
Target:  5'- uCCCCgcgcAGGcGCAUGAGCACCAGcGCg--- -3'
miRNA:   3'- -GGGG----UCU-CGUAUUUGUGGUC-CGgccc -5'
5547 5' -55.3 NC_001806.1 + 3654 0.72 0.658423
Target:  5'- cCCCCucguCAUcuGCGCCGGcGCCGGGg -3'
miRNA:   3'- -GGGGucucGUAuuUGUGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 4131 0.68 0.876272
Target:  5'- cCCCCAGAgGCccGGGCGgcugucgcCCAGGCCGc- -3'
miRNA:   3'- -GGGGUCU-CGuaUUUGU--------GGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 4179 0.76 0.460409
Target:  5'- cCCCgGGGGCGgGGGC-CCGGcGCCGGGc -3'
miRNA:   3'- -GGGgUCUCGUaUUUGuGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 4414 0.68 0.876272
Target:  5'- gCCUCGGAGagggggGGugGcCCGGGCgGGGg -3'
miRNA:   3'- -GGGGUCUCgua---UUugU-GGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 4728 0.67 0.883332
Target:  5'- cUCCCGuucGCG---GCcCCGGGCCGGGg -3'
miRNA:   3'- -GGGGUcu-CGUauuUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 4825 0.71 0.698859
Target:  5'- gUCCGGGGCGgcgAGGcCGCgGGGUCGGGc -3'
miRNA:   3'- gGGGUCUCGUa--UUU-GUGgUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 5853 0.69 0.821117
Target:  5'- cCCCCGGucccGCccgccGGACGCCGGGaccaaCGGGa -3'
miRNA:   3'- -GGGGUCu---CGua---UUUGUGGUCCg----GCCC- -5'
5547 5' -55.3 NC_001806.1 + 6075 0.7 0.757659
Target:  5'- cCCCgGGGGCG--GGC-CCGGGCggCGGGg -3'
miRNA:   3'- -GGGgUCUCGUauUUGuGGUCCG--GCCC- -5'
5547 5' -55.3 NC_001806.1 + 7259 0.68 0.868996
Target:  5'- uCCCCAGGacaccGCGUGuuCcCCGGGagccCCGGGu -3'
miRNA:   3'- -GGGGUCU-----CGUAUuuGuGGUCC----GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 7535 0.69 0.837018
Target:  5'- uCCCCAcaacaugGAGCAU--ACGCuCGGGCCcgcgucGGGa -3'
miRNA:   3'- -GGGGU-------CUCGUAuuUGUG-GUCCGG------CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.