miRNA display CGI


Results 1 - 20 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 89556 0.66 0.945774
Target:  5'- gCCCGGuuuauucGCGUcgGCccgGCC-GGCCGGGc -3'
miRNA:   3'- gGGGUCu------CGUAuuUG---UGGuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 41104 0.76 0.451228
Target:  5'- -gCCGGAaccCAcGGACGCCGGGCCGGGc -3'
miRNA:   3'- ggGGUCUc--GUaUUUGUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 93921 0.76 0.451228
Target:  5'- aCCCCGGGGCuca---GCCAGacGCCGGGu -3'
miRNA:   3'- -GGGGUCUCGuauuugUGGUC--CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 4179 0.76 0.460409
Target:  5'- cCCCgGGGGCGgGGGC-CCGGcGCCGGGc -3'
miRNA:   3'- -GGGgUCUCGUaUUUGuGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 50644 0.75 0.479061
Target:  5'- gCCCGG-GCGUGcggggacgcGCACCGGcGCCGGGa -3'
miRNA:   3'- gGGGUCuCGUAUu--------UGUGGUC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 103946 0.75 0.488525
Target:  5'- aCgCGGAGCGUccguugggcgacAAACACCAGGaCGGGg -3'
miRNA:   3'- gGgGUCUCGUA------------UUUGUGGUCCgGCCC- -5'
5547 5' -55.3 NC_001806.1 + 57017 0.75 0.498076
Target:  5'- gCCCAGugccaGGCAcugGGugGCCGGGCCcGGGg -3'
miRNA:   3'- gGGGUC-----UCGUa--UUugUGGUCCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 39183 0.75 0.511585
Target:  5'- gCCCCGGGGCGgcGGC-CUugucugcguucuuggGGGCCGGGc -3'
miRNA:   3'- -GGGGUCUCGUauUUGuGG---------------UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 29430 0.75 0.517421
Target:  5'- cCCCCAGAcccGCAUGGAgGCCgaggAGGCCGucaGGg -3'
miRNA:   3'- -GGGGUCU---CGUAUUUgUGG----UCCGGC---CC- -5'
5547 5' -55.3 NC_001806.1 + 147681 0.76 0.433174
Target:  5'- cCCCgGGGGCcgGGGCGCgGGGgCGGGc -3'
miRNA:   3'- -GGGgUCUCGuaUUUGUGgUCCgGCCC- -5'
5547 5' -55.3 NC_001806.1 + 131975 0.76 0.424305
Target:  5'- gCCCUGGAGCGcc-AgACCGGGCCGGu -3'
miRNA:   3'- -GGGGUCUCGUauuUgUGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 2936 0.76 0.424305
Target:  5'- gCCUCcGGGCGgccGgGCCGGGCCGGGa -3'
miRNA:   3'- -GGGGuCUCGUauuUgUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 140120 0.81 0.235499
Target:  5'- cCCCCAGAGg--AGACGCCAGGCgCGGc -3'
miRNA:   3'- -GGGGUCUCguaUUUGUGGUCCG-GCCc -5'
5547 5' -55.3 NC_001806.1 + 101916 0.81 0.2531
Target:  5'- gCCCCGccuGGGCGUcaAGACacagggcgGCCAGGCCGGGa -3'
miRNA:   3'- -GGGGU---CUCGUA--UUUG--------UGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 77100 0.8 0.278233
Target:  5'- -aCCAGGGCGUccugggcgccaaGAGCGCCgagcGGGCCGGGg -3'
miRNA:   3'- ggGGUCUCGUA------------UUUGUGG----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 73440 0.78 0.334372
Target:  5'- gCCCGGAcGCAc--AC-CCAGGCCGGGg -3'
miRNA:   3'- gGGGUCU-CGUauuUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 121401 0.78 0.349643
Target:  5'- cCCCCGGAGCcgGGcgcgugcuGCGCCuuGGGCCcGGGg -3'
miRNA:   3'- -GGGGUCUCGuaUU--------UGUGG--UCCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 12419 0.77 0.389113
Target:  5'- aCCCAGAGgccCAcGAGCACCAGGCCcugcaacGGGc -3'
miRNA:   3'- gGGGUCUC---GUaUUUGUGGUCCGG-------CCC- -5'
5547 5' -55.3 NC_001806.1 + 34516 0.77 0.398366
Target:  5'- gCCCGGGGgGUGGGaGCgCGGGCCGGGc -3'
miRNA:   3'- gGGGUCUCgUAUUUgUG-GUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 33031 0.77 0.414677
Target:  5'- aCCCC-GAGUGUucaucucAGGCcCCGGGCCGGGa -3'
miRNA:   3'- -GGGGuCUCGUA-------UUUGuGGUCCGGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.