miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 3104 0.66 0.926364
Target:  5'- gCCgCGGAGCu----CGgCAGGCgCGGGu -3'
miRNA:   3'- -GGgGUCUCGuauuuGUgGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 70754 0.66 0.924756
Target:  5'- gCCCGG-GCGUcgaagcugcugucgGGAgACCAGGuccCCGGGu -3'
miRNA:   3'- gGGGUCuCGUA--------------UUUgUGGUCC---GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 36835 0.66 0.920919
Target:  5'- aCCCAG-GCcgu-ACGCCGGGCCc-- -3'
miRNA:   3'- gGGGUCuCGuauuUGUGGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 117806 0.66 0.920919
Target:  5'- aCCCGGAcGCcgcgAAACGCCccgggaugcaGGGCCaGGa -3'
miRNA:   3'- gGGGUCU-CGua--UUUGUGG----------UCCGGcCC- -5'
5547 5' -55.3 NC_001806.1 + 55248 0.66 0.920919
Target:  5'- --aCGGAGgGUcgGCGcCCGGGCCGGc -3'
miRNA:   3'- gggGUCUCgUAuuUGU-GGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 88974 0.66 0.920919
Target:  5'- gCCCCAcaGGCGcGAGCGCCGcGGCCa-- -3'
miRNA:   3'- -GGGGUc-UCGUaUUUGUGGU-CCGGccc -5'
5547 5' -55.3 NC_001806.1 + 142017 0.66 0.920919
Target:  5'- cCUCUAGGGCGgcgagGAGCGCC--GCCGGc -3'
miRNA:   3'- -GGGGUCUCGUa----UUUGUGGucCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 57806 0.66 0.920919
Target:  5'- gUCCAGGGgGacUGGAuCugCGGGCgGGGg -3'
miRNA:   3'- gGGGUCUCgU--AUUU-GugGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 103145 0.67 0.915237
Target:  5'- uCUCCAGGGCAgcGGCAgCCGcuguGcGCUGGGc -3'
miRNA:   3'- -GGGGUCUCGUauUUGU-GGU----C-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 78329 0.67 0.915237
Target:  5'- uCCCCGagcugggaaccGAGCGc-GGCGCCGcGCUGGGa -3'
miRNA:   3'- -GGGGU-----------CUCGUauUUGUGGUcCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 75697 0.67 0.915237
Target:  5'- gCCCgCAGuAGCcacGAGCGCUGGGCCGc- -3'
miRNA:   3'- -GGG-GUC-UCGua-UUUGUGGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 56824 0.67 0.915237
Target:  5'- gCCCCcGGGCccgccAACACCGccgcGGCCaGGGc -3'
miRNA:   3'- -GGGGuCUCGuau--UUGUGGU----CCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 89859 0.67 0.914656
Target:  5'- aCCCGGAGCAccugaccgUAAGCAUCuGuGCCucucgcaGGGa -3'
miRNA:   3'- gGGGUCUCGU--------AUUUGUGGuC-CGG-------CCC- -5'
5547 5' -55.3 NC_001806.1 + 150874 0.67 0.90932
Target:  5'- gCUCCGcGGGCcaGGGC-CCGGGCaCGGGc -3'
miRNA:   3'- -GGGGU-CUCGuaUUUGuGGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 150412 0.67 0.90932
Target:  5'- aCCCCAGGGgaGUGGuuACGCgC-GGCgCGGGa -3'
miRNA:   3'- -GGGGUCUCg-UAUU--UGUG-GuCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 12383 0.67 0.90932
Target:  5'- aCCgUGGGGCcacGGACaACCAGGCUGGu -3'
miRNA:   3'- -GGgGUCUCGua-UUUG-UGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 73078 0.67 0.903167
Target:  5'- uUCCGGAGCcUGuccucgccucGGCACCccccgacccGGCCGGGc -3'
miRNA:   3'- gGGGUCUCGuAU----------UUGUGGu--------CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 62613 0.67 0.903167
Target:  5'- uCgCCGGAGgggguggGUGGGCuCCAGGCaCGGGa -3'
miRNA:   3'- -GgGGUCUCg------UAUUUGuGGUCCG-GCCC- -5'
5547 5' -55.3 NC_001806.1 + 20662 0.67 0.903167
Target:  5'- gCCCCc-GGCGUGccGGCGUCGGGgCGGGg -3'
miRNA:   3'- -GGGGucUCGUAU--UUGUGGUCCgGCCC- -5'
5547 5' -55.3 NC_001806.1 + 30287 0.67 0.903167
Target:  5'- cCCCCGGGGCGga---GCC-GGCCGc- -3'
miRNA:   3'- -GGGGUCUCGUauuugUGGuCCGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.