miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 3' -56.2 NC_001806.1 + 2463 0.66 0.881375
Target:  5'- --gCGGCCCCGUGGGGgUGGGgguuaucgucgucGUCGCc -3'
miRNA:   3'- cagGUCGGGGUGCUCCgAUCU-------------UAGCG- -5'
5548 3' -56.2 NC_001806.1 + 2825 0.7 0.696009
Target:  5'- cUCgGGCCCCG-GGGGCgUGGAGgggggCGCg -3'
miRNA:   3'- cAGgUCGGGGUgCUCCG-AUCUUa----GCG- -5'
5548 3' -56.2 NC_001806.1 + 3340 0.66 0.895676
Target:  5'- cUCCGGCCgCGgGGGGCUGGcGg-GCc -3'
miRNA:   3'- cAGGUCGGgGUgCUCCGAUCuUagCG- -5'
5548 3' -56.2 NC_001806.1 + 3374 0.69 0.735829
Target:  5'- -gCCAGCCCCGgGAcGGCcgccaGGUCGCc -3'
miRNA:   3'- caGGUCGGGGUgCU-CCGauc--UUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 4271 0.68 0.80966
Target:  5'- cGUCCAGCucgaCCCGcCGGGGCUGcccggccguGAagcggcccguggcGUCGCg -3'
miRNA:   3'- -CAGGUCG----GGGU-GCUCCGAU---------CU-------------UAGCG- -5'
5548 3' -56.2 NC_001806.1 + 4734 0.68 0.810539
Target:  5'- uUCgCGGCCCCGggcCGGGGCcc-GGUCGCc -3'
miRNA:   3'- cAG-GUCGGGGU---GCUCCGaucUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 4966 0.67 0.844284
Target:  5'- cUCCcGUCCCGCcGGGCgucgucGAGUCGUg -3'
miRNA:   3'- cAGGuCGGGGUGcUCCGau----CUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 14462 0.68 0.818376
Target:  5'- --aCAGcCCCCACGAGGCUucccaaaagccccAGAugccagacugCGCg -3'
miRNA:   3'- cagGUC-GGGGUGCUCCGA-------------UCUua--------GCG- -5'
5548 3' -56.2 NC_001806.1 + 20177 0.67 0.844284
Target:  5'- -gCCcGCCCC-CGGGGCcggcgcGGAGUCGg -3'
miRNA:   3'- caGGuCGGGGuGCUCCGa-----UCUUAGCg -5'
5548 3' -56.2 NC_001806.1 + 22906 0.69 0.74558
Target:  5'- -gCCAGCCCCcCGcGGCcGGAGggaccCGCg -3'
miRNA:   3'- caGGUCGGGGuGCuCCGaUCUUa----GCG- -5'
5548 3' -56.2 NC_001806.1 + 23420 0.67 0.827768
Target:  5'- cUCCAcGCCCC-CGGGGCccGAGccCGCc -3'
miRNA:   3'- cAGGU-CGGGGuGCUCCGauCUUa-GCG- -5'
5548 3' -56.2 NC_001806.1 + 23785 0.7 0.716063
Target:  5'- -cCCAcCCCCACGGGGCcgccgGGGGcCGCc -3'
miRNA:   3'- caGGUcGGGGUGCUCCGa----UCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 29981 0.71 0.624593
Target:  5'- cGUCUGGCCCCuccgGgGGGGUUGGggUUGg -3'
miRNA:   3'- -CAGGUCGGGG----UgCUCCGAUCuuAGCg -5'
5548 3' -56.2 NC_001806.1 + 30282 0.69 0.735829
Target:  5'- -cCCGGCCCC-CGGGGC-GGAGcCGg -3'
miRNA:   3'- caGGUCGGGGuGCUCCGaUCUUaGCg -5'
5548 3' -56.2 NC_001806.1 + 31096 0.66 0.902131
Target:  5'- -cCCGGCUgcgggCCGCGGuccccGGCUGGAGcCGCc -3'
miRNA:   3'- caGGUCGG-----GGUGCU-----CCGAUCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 37942 0.7 0.665549
Target:  5'- cGUCCAccccGCCCCgggGCGGGGUcccccAGggUUGCg -3'
miRNA:   3'- -CAGGU----CGGGG---UGCUCCGa----UCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 42012 0.76 0.377965
Target:  5'- cUCCGuGCUggCCGCGGGGUUGGggUCGUg -3'
miRNA:   3'- cAGGU-CGG--GGUGCUCCGAUCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 42045 0.67 0.867592
Target:  5'- cGUCaCGGCCCgaagaUGCGuGGCUAGg--CGCg -3'
miRNA:   3'- -CAG-GUCGGG-----GUGCuCCGAUCuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 42241 0.66 0.88831
Target:  5'- --gCGGCCCCGCGGgcguacuGGCUcgugcaacAGAAcCGCg -3'
miRNA:   3'- cagGUCGGGGUGCU-------CCGA--------UCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 42577 0.67 0.867592
Target:  5'- uGUCCcagggacgugcGCCCCACGAGcgaGCguagGGAcgCGCc -3'
miRNA:   3'- -CAGGu----------CGGGGUGCUC---CGa---UCUuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.