miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 3' -56.2 NC_001806.1 + 57138 0.66 0.908352
Target:  5'- aUCCgcgcggugGGCCgCGCGAGGggAGGGggugCGCg -3'
miRNA:   3'- cAGG--------UCGGgGUGCUCCgaUCUUa---GCG- -5'
5548 3' -56.2 NC_001806.1 + 119280 0.7 0.675741
Target:  5'- -cCCGGCCCCACGcggGGGCgcccgcAGAccCGCc -3'
miRNA:   3'- caGGUCGGGGUGC---UCCGa-----UCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 2825 0.7 0.696009
Target:  5'- cUCgGGCCCCG-GGGGCgUGGAGgggggCGCg -3'
miRNA:   3'- cAGgUCGGGGUgCUCCG-AUCUUa----GCG- -5'
5548 3' -56.2 NC_001806.1 + 141907 0.7 0.706067
Target:  5'- gGUCCAGUCCa--GAGGCgccgAG-GUCGCc -3'
miRNA:   3'- -CAGGUCGGGgugCUCCGa---UCuUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 88964 0.7 0.706067
Target:  5'- gGUCCAcgccGCCCCAC-AGGCgcGAG-CGCc -3'
miRNA:   3'- -CAGGU----CGGGGUGcUCCGauCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 23785 0.7 0.716063
Target:  5'- -cCCAcCCCCACGGGGCcgccgGGGGcCGCc -3'
miRNA:   3'- caGGUcGGGGUGCUCCGa----UCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 3374 0.69 0.735829
Target:  5'- -gCCAGCCCCGgGAcGGCcgccaGGUCGCc -3'
miRNA:   3'- caGGUCGGGGUgCU-CCGauc--UUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 148898 0.69 0.735829
Target:  5'- uGUCC-GCCUCG-GAGGC-GGAGUCGUc -3'
miRNA:   3'- -CAGGuCGGGGUgCUCCGaUCUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 30282 0.69 0.735829
Target:  5'- -cCCGGCCCC-CGGGGC-GGAGcCGg -3'
miRNA:   3'- caGGUCGGGGuGCUCCGaUCUUaGCg -5'
5548 3' -56.2 NC_001806.1 + 53882 0.7 0.665549
Target:  5'- --gCAGCCgCGCGGGGaucAGggUCGCc -3'
miRNA:   3'- cagGUCGGgGUGCUCCga-UCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 37942 0.7 0.665549
Target:  5'- cGUCCAccccGCCCCgggGCGGGGUcccccAGggUUGCg -3'
miRNA:   3'- -CAGGU----CGGGG---UGCUCCGa----UCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 135062 0.71 0.655329
Target:  5'- -aCCGGCCCCGCGgggacgcgccGGGCcGGAAaucggCGCc -3'
miRNA:   3'- caGGUCGGGGUGC----------UCCGaUCUUa----GCG- -5'
5548 3' -56.2 NC_001806.1 + 89117 0.86 0.090005
Target:  5'- cGUCCAGCaCCCGCGGGGCgauGAAUCGa -3'
miRNA:   3'- -CAGGUCG-GGGUGCUCCGau-CUUAGCg -5'
5548 3' -56.2 NC_001806.1 + 42012 0.76 0.377965
Target:  5'- cUCCGuGCUggCCGCGGGGUUGGggUCGUg -3'
miRNA:   3'- cAGGU-CGG--GGUGCUCCGAUCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 135890 0.72 0.563472
Target:  5'- -cCCGGCCUCGuCGAGGUaGGAA-CGCa -3'
miRNA:   3'- caGGUCGGGGU-GCUCCGaUCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 122196 0.72 0.573577
Target:  5'- -aCCAGCCCCGC-AGGCaGGcGUCGa -3'
miRNA:   3'- caGGUCGGGGUGcUCCGaUCuUAGCg -5'
5548 3' -56.2 NC_001806.1 + 123833 0.72 0.604117
Target:  5'- aUCCGGCCuCCGCGAgcGGCU----UCGCg -3'
miRNA:   3'- cAGGUCGG-GGUGCU--CCGAucuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 81097 0.71 0.613324
Target:  5'- -aCCAGCCUacauCACGugcgcauguuacuGGGCUAGAcgCGCu -3'
miRNA:   3'- caGGUCGGG----GUGC-------------UCCGAUCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 29981 0.71 0.624593
Target:  5'- cGUCUGGCCCCuccgGgGGGGUUGGggUUGg -3'
miRNA:   3'- -CAGGUCGGGG----UgCUCCGAUCuuAGCg -5'
5548 3' -56.2 NC_001806.1 + 70521 0.71 0.655329
Target:  5'- -cCUGGCCCCcCGAGGCcaugGGGGaCGCg -3'
miRNA:   3'- caGGUCGGGGuGCUCCGa---UCUUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.