miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 3' -56.2 NC_001806.1 + 42045 0.67 0.867592
Target:  5'- cGUCaCGGCCCgaagaUGCGuGGCUAGg--CGCg -3'
miRNA:   3'- -CAG-GUCGGG-----GUGCuCCGAUCuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 92473 0.67 0.867592
Target:  5'- cGUCCgaGGCCgCCA--AGGCgcGggUCGCc -3'
miRNA:   3'- -CAGG--UCGG-GGUgcUCCGauCuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 125880 0.67 0.852255
Target:  5'- -cCCGGCCCCucaugggguuuuACGAGGCggcca-CGCa -3'
miRNA:   3'- caGGUCGGGG------------UGCUCCGaucuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 138541 0.67 0.844284
Target:  5'- uUCCGGgCCUuCGAGGC-AGuGUUGCg -3'
miRNA:   3'- cAGGUCgGGGuGCUCCGaUCuUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 20177 0.67 0.844284
Target:  5'- -gCCcGCCCC-CGGGGCcggcgcGGAGUCGg -3'
miRNA:   3'- caGGuCGGGGuGCUCCGa-----UCUUAGCg -5'
5548 3' -56.2 NC_001806.1 + 4966 0.67 0.844284
Target:  5'- cUCCcGUCCCGCcGGGCgucgucGAGUCGUg -3'
miRNA:   3'- cAGGuCGGGGUGcUCCGau----CUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 67211 0.67 0.844284
Target:  5'- -gCCGGCCUgGCGGGGCg-----CGCu -3'
miRNA:   3'- caGGUCGGGgUGCUCCGaucuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 94733 0.67 0.836119
Target:  5'- -aCCuGCCCCACGccgccGGGCUGucGGA-CGCc -3'
miRNA:   3'- caGGuCGGGGUGC-----UCCGAU--CUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 147671 0.67 0.827768
Target:  5'- -gCCGGCUCCGCcccgGGGGCcGGGG-CGCg -3'
miRNA:   3'- caGGUCGGGGUG----CUCCGaUCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 23420 0.67 0.827768
Target:  5'- cUCCAcGCCCC-CGGGGCccGAGccCGCc -3'
miRNA:   3'- cAGGU-CGGGGuGCUCCGauCUUa-GCG- -5'
5548 3' -56.2 NC_001806.1 + 118956 0.68 0.819239
Target:  5'- cGUCCAGCgCCGgGGGGUUGu--UCGUc -3'
miRNA:   3'- -CAGGUCGgGGUgCUCCGAUcuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 68393 0.68 0.819239
Target:  5'- -aCCGGgCCCACG-GGCUuccGGAGacggCGCu -3'
miRNA:   3'- caGGUCgGGGUGCuCCGA---UCUUa---GCG- -5'
5548 3' -56.2 NC_001806.1 + 14462 0.68 0.818376
Target:  5'- --aCAGcCCCCACGAGGCUucccaaaagccccAGAugccagacugCGCg -3'
miRNA:   3'- cagGUC-GGGGUGCUCCGA-------------UCUua--------GCG- -5'
5548 3' -56.2 NC_001806.1 + 149833 0.68 0.818376
Target:  5'- cUCCggggcggGGCUCCAUGGgggucguaugcGGCUGGAggGUCGCg -3'
miRNA:   3'- cAGG-------UCGGGGUGCU-----------CCGAUCU--UAGCG- -5'
5548 3' -56.2 NC_001806.1 + 49099 0.68 0.818376
Target:  5'- -gUCGGCucgcgaaCCCGCGGGGCgcaggAGGcgCGCa -3'
miRNA:   3'- caGGUCG-------GGGUGCUCCGa----UCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 4734 0.68 0.810539
Target:  5'- uUCgCGGCCCCGggcCGGGGCcc-GGUCGCc -3'
miRNA:   3'- cAG-GUCGGGGU---GCUCCGaucUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 4271 0.68 0.80966
Target:  5'- cGUCCAGCucgaCCCGcCGGGGCUGcccggccguGAagcggcccguggcGUCGCg -3'
miRNA:   3'- -CAGGUCG----GGGU-GCUCCGAU---------CU-------------UAGCG- -5'
5548 3' -56.2 NC_001806.1 + 85954 0.68 0.801676
Target:  5'- -aCCAGCagCUUGCGGGGCuUGGAcgCGCc -3'
miRNA:   3'- caGGUCG--GGGUGCUCCG-AUCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 150703 0.68 0.79266
Target:  5'- aGUCCcGCCCC-CGAGGCggcc--CGCc -3'
miRNA:   3'- -CAGGuCGGGGuGCUCCGaucuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 117369 0.68 0.79266
Target:  5'- gGUCCGGCCugggCCGCGAGG-UAG-AUgGCc -3'
miRNA:   3'- -CAGGUCGG----GGUGCUCCgAUCuUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.