miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 80166 0.7 0.439584
Target:  5'- cAGG----UCCCUCUCCCCCGcCuCCCg -3'
miRNA:   3'- -UCCcuugAGGGAGAGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 148242 0.7 0.451737
Target:  5'- cGGGGGGCgcgaucagguuacgCCCcCUCCCCgGccCGCCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGaGAGGGGgCu-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 120259 0.7 0.457002
Target:  5'- gAGGGGA---CCg--CCCCCGACGCCUu -3'
miRNA:   3'- -UCCCUUgagGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30642 0.7 0.460529
Target:  5'- gGGGGGGCgcggccagggugggCCCgggaCcCCCCUGACGUCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGa---GaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 112880 0.7 0.465848
Target:  5'- cGGGGACcuagUCCC-CgCCCCCGGCcaCCCg -3'
miRNA:   3'- uCCCUUG----AGGGaGaGGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 96515 0.71 0.373146
Target:  5'- cGGGGGcccugccacuccgGCgccgCCCg--CCCCUGGCGCCCc -3'
miRNA:   3'- -UCCCU-------------UGa---GGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 22924 0.71 0.373923
Target:  5'- gAGGGAcccGCgggCCCcgCUUCCCCGccGCGCCg -3'
miRNA:   3'- -UCCCU---UGa--GGGa-GAGGGGGC--UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 140448 0.71 0.373923
Target:  5'- gGGGGGGCgguuaCUCggCCCCCGAgGCCa -3'
miRNA:   3'- -UCCCUUGagg--GAGa-GGGGGCUgCGGg -5'
5548 5' -61.7 NC_001806.1 + 97510 0.71 0.381761
Target:  5'- cGGcGGCUCCUuccgauUCUCUUCCGACGCCa -3'
miRNA:   3'- uCCcUUGAGGG------AGAGGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 48266 0.71 0.389707
Target:  5'- gAGGGccuGCUCgaUCUCCCggacgaCGACGCCCc -3'
miRNA:   3'- -UCCCu--UGAGggAGAGGGg-----GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 133395 0.71 0.39776
Target:  5'- uGGGGGAUUUCCUCUCCgCgG--GCCCg -3'
miRNA:   3'- -UCCCUUGAGGGAGAGGgGgCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5125 0.71 0.39776
Target:  5'- cGGGGcGCUgCUUgUUCUCCGACGCCa -3'
miRNA:   3'- -UCCCuUGAgGGAgAGGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 26712 0.71 0.40592
Target:  5'- cGGGGGGCggggcugacCCCUCccacCCCCCcucGCGCCCc -3'
miRNA:   3'- -UCCCUUGa--------GGGAGa---GGGGGc--UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5236 0.71 0.414183
Target:  5'- gAGGGGGCgagaCCCaCggaCCCCGACGaCCCc -3'
miRNA:   3'- -UCCCUUGa---GGGaGag-GGGGCUGC-GGG- -5'
5548 5' -61.7 NC_001806.1 + 113299 0.71 0.414183
Target:  5'- gGGGGGACg----UUCCCCCGGCcgGCCCg -3'
miRNA:   3'- -UCCCUUGagggaGAGGGGGCUG--CGGG- -5'
5548 5' -61.7 NC_001806.1 + 19722 0.72 0.329234
Target:  5'- cGGGuGAGCcCCCUCcuccgCCCCCG-CGUCCc -3'
miRNA:   3'- -UCC-CUUGaGGGAGa----GGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 3678 0.72 0.351074
Target:  5'- -cGGGGCUCCC-CgcggCCCCCGucaGCGCCg -3'
miRNA:   3'- ucCCUUGAGGGaGa---GGGGGC---UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 118903 0.72 0.366196
Target:  5'- gGGGGAGCUUCUgg-CCCCCGuCGUgCCg -3'
miRNA:   3'- -UCCCUUGAGGGagaGGGGGCuGCG-GG- -5'
5548 5' -61.7 NC_001806.1 + 129637 0.73 0.308414
Target:  5'- uGGGGAccgaGCUCCUgcaggCUgCCCUG-CGCCCg -3'
miRNA:   3'- -UCCCU----UGAGGGa----GAgGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 147086 0.73 0.322181
Target:  5'- cGGGcacACUUCCUCggCCCCCG-CgGCCCa -3'
miRNA:   3'- uCCCu--UGAGGGAGa-GGGGGCuG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.