Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 24801 | 0.67 | 0.597202 |
Target: 5'- cGGGGGC-CCUg--CCgCCGGCGCCg -3' miRNA: 3'- uCCCUUGaGGGagaGGgGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 33144 | 0.67 | 0.597202 |
Target: 5'- cGGGGGC-CCCUCgUCCCgggCCGuacgcggccuuCGCCCc -3' miRNA: 3'- uCCCUUGaGGGAG-AGGG---GGCu----------GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 45704 | 0.67 | 0.597202 |
Target: 5'- -cGGAccCUCuCUUCUCUCCCGGgcCGCCCc -3' miRNA: 3'- ucCCUu-GAG-GGAGAGGGGGCU--GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 19945 | 0.67 | 0.606935 |
Target: 5'- gGGGuGGGCgggUCUUCcCCCCCG-CGUCCg -3' miRNA: 3'- -UCC-CUUGa--GGGAGaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 32246 | 0.67 | 0.606935 |
Target: 5'- cAGGuGGGCcgguacuccaUCCCcccCUCCCCCGACccuuCCCa -3' miRNA: 3'- -UCC-CUUG----------AGGGa--GAGGGGGCUGc---GGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 50127 | 0.67 | 0.606935 |
Target: 5'- gGGGGggUuagugUCCCcccaaUCcggCCCCGACGCCg -3' miRNA: 3'- -UCCCuuG-----AGGGag---AG---GGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 65201 | 0.67 | 0.613759 |
Target: 5'- cGGGGccGACUggauccCCCUCcCCCCCGaauaccgcagagcgGCGCCg -3' miRNA: 3'- -UCCC--UUGA------GGGAGaGGGGGC--------------UGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 47030 | 0.67 | 0.616686 |
Target: 5'- uGGGggUUUUCUCUUCCC--GCGCCg -3' miRNA: 3'- uCCCuuGAGGGAGAGGGGgcUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 150109 | 0.66 | 0.675172 |
Target: 5'- cGGGGcGGC-CCCg-UCCccggggaccaaCCCGGCGCCCc -3' miRNA: 3'- -UCCC-UUGaGGGagAGG-----------GGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 54120 | 0.66 | 0.679047 |
Target: 5'- gGGGGGugUCCCggggcccaggggCCgguaggcguguUCCGAUGCCCg -3' miRNA: 3'- -UCCCUugAGGGaga---------GG-----------GGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 64808 | 0.66 | 0.680983 |
Target: 5'- aGGGGGACgggguaggccgugCCCgUUCCCagaCGugGCCg -3' miRNA: 3'- -UCCCUUGa------------GGGaGAGGGg--GCugCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 127953 | 0.66 | 0.683884 |
Target: 5'- gAGGGcgacgcgGACUCCCgUCUgagCCCCCGgccacuGCGUCUc -3' miRNA: 3'- -UCCC-------UUGAGGG-AGA---GGGGGC------UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 97596 | 0.66 | 0.68485 |
Target: 5'- uGGGGGACUgCaUCggcaaggacgCCCgCGACGCCa -3' miRNA: 3'- -UCCCUUGAgGgAGa---------GGGgGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 20150 | 0.66 | 0.675172 |
Target: 5'- -cGGAGagaCCCgC-CCCCCGcCGCCCg -3' miRNA: 3'- ucCCUUga-GGGaGaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 101552 | 0.66 | 0.674202 |
Target: 5'- -cGGAGgcucuuguuuuuuCUCCCUaaugccccCUCCCCCcuCGCCCa -3' miRNA: 3'- ucCCUU-------------GAGGGA--------GAGGGGGcuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 83328 | 0.66 | 0.674202 |
Target: 5'- uGGGGAgggGCUuuuggacaccgggCCCUUUUCCgCGGCGgCCa -3' miRNA: 3'- -UCCCU---UGA-------------GGGAGAGGGgGCUGCgGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 79172 | 0.66 | 0.666434 |
Target: 5'- gGGGGAGCuauUCCCggggcaUCcgguguaccagcgcgCCCCCGACGaCCa -3' miRNA: 3'- -UCCCUUG---AGGG------AGa--------------GGGGGCUGCgGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 5770 | 0.66 | 0.665461 |
Target: 5'- cAGGGGGCggggCCCggg-CCCCGACuuCCCg -3' miRNA: 3'- -UCCCUUGa---GGGagagGGGGCUGc-GGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 5323 | 0.66 | 0.665461 |
Target: 5'- cAGGGAcgGCcgaUCCCcCUCCCgCGcuuCGUCCg -3' miRNA: 3'- -UCCCU--UG---AGGGaGAGGGgGCu--GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 107816 | 0.66 | 0.70408 |
Target: 5'- gGGGGAucggcuacaaGCUCaCCggCgucgaCgUCCGACGCCCa -3' miRNA: 3'- -UCCCU----------UGAG-GGa-Ga----GgGGGCUGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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