miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 109045 0.68 0.558562
Target:  5'- gAGGGGGCUcaggCCCaacgCggCCCCGAuaaaCGCCCg -3'
miRNA:   3'- -UCCCUUGA----GGGa---GagGGGGCU----GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 112880 0.7 0.465848
Target:  5'- cGGGGACcuagUCCC-CgCCCCCGGCcaCCCg -3'
miRNA:   3'- uCCCUUG----AGGGaGaGGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 113299 0.71 0.414183
Target:  5'- gGGGGGACg----UUCCCCCGGCcgGCCCg -3'
miRNA:   3'- -UCCCUUGagggaGAGGGGGCUG--CGGG- -5'
5548 5' -61.7 NC_001806.1 + 116424 0.68 0.549004
Target:  5'- cGGGGAC-CCCaUCagCCUCGuccCGCCCg -3'
miRNA:   3'- uCCCUUGaGGG-AGagGGGGCu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 118903 0.72 0.366196
Target:  5'- gGGGGAGCUUCUgg-CCCCCGuCGUgCCg -3'
miRNA:   3'- -UCCCUUGAGGGagaGGGGGCuGCG-GG- -5'
5548 5' -61.7 NC_001806.1 + 120259 0.7 0.457002
Target:  5'- gAGGGGA---CCg--CCCCCGACGCCUu -3'
miRNA:   3'- -UCCCUUgagGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 120735 0.67 0.59623
Target:  5'- cGGGAACggCCgguCUCgcuagcggcgccuUCCCCCGGCcaccucGCCCa -3'
miRNA:   3'- uCCCUUGa-GG---GAG-------------AGGGGGCUG------CGGG- -5'
5548 5' -61.7 NC_001806.1 + 120818 0.68 0.549004
Target:  5'- uGGGGuuugCCCUC-CCCCCGcC-CCCg -3'
miRNA:   3'- -UCCCuugaGGGAGaGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 120856 0.69 0.520659
Target:  5'- -uGGGAC-CCCggcggCCCCUGGCGCCg -3'
miRNA:   3'- ucCCUUGaGGGaga--GGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 121567 0.67 0.597202
Target:  5'- cGGGGGGCUgcgagUCCUg-CgCCCCGcCGCCCc -3'
miRNA:   3'- -UCCCUUGA-----GGGAgaG-GGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 123764 0.69 0.502083
Target:  5'- cGGGcgccccagcGGC-CCCUCUCUCCagGACGCCg -3'
miRNA:   3'- uCCC---------UUGaGGGAGAGGGGg-CUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 125318 0.67 0.645974
Target:  5'- cGaGGAcAC-CCCUCguggCCCCGACaGCCCc -3'
miRNA:   3'- uC-CCU-UGaGGGAGag--GGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 126763 0.67 0.616686
Target:  5'- cAGGGcuacgugcucGACagCCaCUUCCCCGACuGCCCc -3'
miRNA:   3'- -UCCC----------UUGagGGaGAGGGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 127953 0.66 0.683884
Target:  5'- gAGGGcgacgcgGACUCCCgUCUgagCCCCCGgccacuGCGUCUc -3'
miRNA:   3'- -UCCC-------UUGAGGG-AGA---GGGGGC------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 129637 0.73 0.308414
Target:  5'- uGGGGAccgaGCUCCUgcaggCUgCCCUG-CGCCCg -3'
miRNA:   3'- -UCCCU----UGAGGGa----GAgGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 132705 0.66 0.70408
Target:  5'- uGGGGGCcagggucgUCCUC-CCCCCGcgaGCugGCCCg -3'
miRNA:   3'- uCCCUUGa-------GGGAGaGGGGGC---UG--CGGG- -5'
5548 5' -61.7 NC_001806.1 + 133395 0.71 0.39776
Target:  5'- uGGGGGAUUUCCUCUCCgCgG--GCCCg -3'
miRNA:   3'- -UCCCUUGAGGGAGAGGgGgCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 134171 0.68 0.568166
Target:  5'- gAGGcGcGCgcaC-CUCCUCCGACGCCCa -3'
miRNA:   3'- -UCC-CuUGaggGaGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 136927 0.67 0.636212
Target:  5'- gGGGGAGCacagcgcuUCCgUgUCCCCCcGCGCa- -3'
miRNA:   3'- -UCCCUUG--------AGGgAgAGGGGGcUGCGgg -5'
5548 5' -61.7 NC_001806.1 + 140448 0.71 0.373923
Target:  5'- gGGGGGGCgguuaCUCggCCCCCGAgGCCa -3'
miRNA:   3'- -UCCCUUGagg--GAGa-GGGGGCUgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.