miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 65443 0.68 0.549004
Target:  5'- aAGGGAGCgggggaugCCgCgg-CCCCCGgguccuggggGCGCCCg -3'
miRNA:   3'- -UCCCUUGa-------GG-GagaGGGGGC----------UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 65201 0.67 0.613759
Target:  5'- cGGGGccGACUggauccCCCUCcCCCCCGaauaccgcagagcgGCGCCg -3'
miRNA:   3'- -UCCC--UUGA------GGGAGaGGGGGC--------------UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 64808 0.66 0.680983
Target:  5'- aGGGGGACgggguaggccgugCCCgUUCCCagaCGugGCCg -3'
miRNA:   3'- -UCCCUUGa------------GGGaGAGGGg--GCugCGGg -5'
5548 5' -61.7 NC_001806.1 + 62803 0.66 0.694489
Target:  5'- aGGGGGGCaaagCCCUCg---CUGACGUCCg -3'
miRNA:   3'- -UCCCUUGa---GGGAGagggGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 58999 0.76 0.190374
Target:  5'- cAGGGcGC-CCC-CUCCUCCGGCuGCCCg -3'
miRNA:   3'- -UCCCuUGaGGGaGAGGGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 57866 0.67 0.597202
Target:  5'- uAGGGccGugUCCgcgcgccaucCUCgcCCCCCGAgCGCCCc -3'
miRNA:   3'- -UCCC--UugAGG----------GAGa-GGGGGCU-GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 56687 0.66 0.70408
Target:  5'- gGGGGGACgggggCCCgggaaCCCCGGguCGCUCu -3'
miRNA:   3'- -UCCCUUGa----GGGagag-GGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 55251 0.66 0.694489
Target:  5'- gAGGGucGGCgCCCgggCcggCCCCCucCGCCCa -3'
miRNA:   3'- -UCCC--UUGaGGGa--Ga--GGGGGcuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 54120 0.66 0.679047
Target:  5'- gGGGGGugUCCCggggcccaggggCCgguaggcguguUCCGAUGCCCg -3'
miRNA:   3'- -UCCCUugAGGGaga---------GG-----------GGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 53233 0.67 0.630353
Target:  5'- gGGGGGAUccgCCCUauuuuccCCCCCGGgccgcaccgggccccCGCCCc -3'
miRNA:   3'- -UCCCUUGa--GGGAga-----GGGGGCU---------------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 52655 0.68 0.549004
Target:  5'- --cGAGCcCCCgcccCUCCCCCGAccuCGCCUa -3'
miRNA:   3'- uccCUUGaGGGa---GAGGGGGCU---GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 50280 0.67 0.626447
Target:  5'- cGGGGcccuGCUCgCCcgCUUcaaUCCCGACGCCg -3'
miRNA:   3'- -UCCCu---UGAG-GGa-GAG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 50127 0.67 0.606935
Target:  5'- gGGGGggUuagugUCCCcccaaUCcggCCCCGACGCCg -3'
miRNA:   3'- -UCCCuuG-----AGGGag---AG---GGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 49797 0.69 0.511336
Target:  5'- uGGGGGucaugcACUUCgC-CUCCCCCGACaacCCCg -3'
miRNA:   3'- -UCCCU------UGAGG-GaGAGGGGGCUGc--GGG- -5'
5548 5' -61.7 NC_001806.1 + 48266 0.71 0.389707
Target:  5'- gAGGGccuGCUCgaUCUCCCggacgaCGACGCCCc -3'
miRNA:   3'- -UCCCu--UGAGggAGAGGGg-----GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 47030 0.67 0.616686
Target:  5'- uGGGggUUUUCUCUUCCC--GCGCCg -3'
miRNA:   3'- uCCCuuGAGGGAGAGGGGgcUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 45704 0.67 0.597202
Target:  5'- -cGGAccCUCuCUUCUCUCCCGGgcCGCCCc -3'
miRNA:   3'- ucCCUu-GAG-GGAGAGGGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 38031 0.67 0.626447
Target:  5'- cGGGAccaccGCgacCCCga-CCCCugCGACGCCCa -3'
miRNA:   3'- uCCCU-----UGa--GGGagaGGGG--GCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 33144 0.67 0.597202
Target:  5'- cGGGGGC-CCCUCgUCCCgggCCGuacgcggccuuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGGAG-AGGG---GGCu----------GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 32967 0.66 0.655726
Target:  5'- -cGGGGC-CCCUUgggUCCgCCGGgGCCCc -3'
miRNA:   3'- ucCCUUGaGGGAG---AGGgGGCUgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.