Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 32246 | 0.67 | 0.606935 |
Target: 5'- cAGGuGGGCcgguacuccaUCCCcccCUCCCCCGACccuuCCCa -3' miRNA: 3'- -UCC-CUUG----------AGGGa--GAGGGGGCUGc---GGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30818 | 0.75 | 0.240721 |
Target: 5'- gAGGGAGacaagaggaaacCUCCCUCggCCCCCG-CGCUg -3' miRNA: 3'- -UCCCUU------------GAGGGAGa-GGGGGCuGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30740 | 0.67 | 0.636212 |
Target: 5'- cGGGGGC-CgCCUCUUCCgCCGccggggccGCGUCCu -3' miRNA: 3'- uCCCUUGaG-GGAGAGGG-GGC--------UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30642 | 0.7 | 0.460529 |
Target: 5'- gGGGGGGCgcggccagggugggCCCgggaCcCCCCUGACGUCCu -3' miRNA: 3'- -UCCCUUGa-------------GGGa---GaGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30444 | 0.67 | 0.597202 |
Target: 5'- cGGGccCUCCCgcggCgccgcccCCUCCGGCGCCg -3' miRNA: 3'- uCCCuuGAGGGa---Ga------GGGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30263 | 0.67 | 0.626447 |
Target: 5'- cGGGg---CCCgg-CCCCCG-CGCCCc -3' miRNA: 3'- uCCCuugaGGGagaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30117 | 0.68 | 0.539498 |
Target: 5'- ---cGACUCCCccccggccUCUCCCCacaggccccccgCGGCGCCCa -3' miRNA: 3'- ucccUUGAGGG--------AGAGGGG------------GCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 26712 | 0.71 | 0.40592 |
Target: 5'- cGGGGGGCggggcugacCCCUCccacCCCCCcucGCGCCCc -3' miRNA: 3'- -UCCCUUGa--------GGGAGa---GGGGGc--UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 24801 | 0.67 | 0.597202 |
Target: 5'- cGGGGGC-CCUg--CCgCCGGCGCCg -3' miRNA: 3'- uCCCUUGaGGGagaGGgGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 23804 | 0.68 | 0.549004 |
Target: 5'- cGGGGGC-CgCCUCUuuggcCCCCUGcGCGCCUc -3' miRNA: 3'- uCCCUUGaG-GGAGA-----GGGGGC-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 23526 | 0.66 | 0.693527 |
Target: 5'- gAGGGccccGACcCCCUgggcggcuggcggCggcagCCCCCGGgGCCCa -3' miRNA: 3'- -UCCC----UUGaGGGA-------------Ga----GGGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 22924 | 0.71 | 0.373923 |
Target: 5'- gAGGGAcccGCgggCCCcgCUUCCCCGccGCGCCg -3' miRNA: 3'- -UCCCU---UGa--GGGa-GAGGGGGC--UGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 22724 | 0.66 | 0.694489 |
Target: 5'- cGGGGGGCga-Cga--CCCCGACGCCg -3' miRNA: 3'- -UCCCUUGaggGagagGGGGCUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 20336 | 0.67 | 0.649876 |
Target: 5'- gGGGGGGCggcaaggcgggcggCCCUUgggCCgCCCGcCGUCCc -3' miRNA: 3'- -UCCCUUGa-------------GGGAGa--GG-GGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 20150 | 0.66 | 0.675172 |
Target: 5'- -cGGAGagaCCCgC-CCCCCGcCGCCCg -3' miRNA: 3'- ucCCUUga-GGGaGaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 19945 | 0.67 | 0.606935 |
Target: 5'- gGGGuGGGCgggUCUUCcCCCCCG-CGUCCg -3' miRNA: 3'- -UCC-CUUGa--GGGAGaGGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 19722 | 0.72 | 0.329234 |
Target: 5'- cGGGuGAGCcCCCUCcuccgCCCCCG-CGUCCc -3' miRNA: 3'- -UCC-CUUGaGGGAGa----GGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 17133 | 0.7 | 0.431017 |
Target: 5'- -----cCUCCC-CUCCCCCGgACGCCUc -3' miRNA: 3'- ucccuuGAGGGaGAGGGGGC-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 14759 | 0.68 | 0.587492 |
Target: 5'- uGGGcuCUCCCcaUCCCCCG-C-CCCa -3' miRNA: 3'- uCCCuuGAGGGagAGGGGGCuGcGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 7398 | 0.76 | 0.185882 |
Target: 5'- cAGGGAGC-CCCggUCUCCCCgGGaGCCCc -3' miRNA: 3'- -UCCCUUGaGGG--AGAGGGGgCUgCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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