miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 83328 0.66 0.674202
Target:  5'- uGGGGAgggGCUuuuggacaccgggCCCUUUUCCgCGGCGgCCa -3'
miRNA:   3'- -UCCCU---UGA-------------GGGAGAGGGgGCUGCgGG- -5'
5548 5' -61.7 NC_001806.1 + 6979 0.66 0.70408
Target:  5'- cGGaGGGugUUCC---CCCCCGugGCUCu -3'
miRNA:   3'- -UC-CCUugAGGGagaGGGGGCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 20150 0.66 0.675172
Target:  5'- -cGGAGagaCCCgC-CCCCCGcCGCCCg -3'
miRNA:   3'- ucCCUUga-GGGaGaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 97596 0.66 0.68485
Target:  5'- uGGGGGACUgCaUCggcaaggacgCCCgCGACGCCa -3'
miRNA:   3'- -UCCCUUGAgGgAGa---------GGGgGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 23526 0.66 0.693527
Target:  5'- gAGGGccccGACcCCCUgggcggcuggcggCggcagCCCCCGGgGCCCa -3'
miRNA:   3'- -UCCC----UUGaGGGA-------------Ga----GGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 101552 0.66 0.674202
Target:  5'- -cGGAGgcucuuguuuuuuCUCCCUaaugccccCUCCCCCcuCGCCCa -3'
miRNA:   3'- ucCCUU-------------GAGGGA--------GAGGGGGcuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 54120 0.66 0.679047
Target:  5'- gGGGGGugUCCCggggcccaggggCCgguaggcguguUCCGAUGCCCg -3'
miRNA:   3'- -UCCCUugAGGGaga---------GG-----------GGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 64808 0.66 0.680983
Target:  5'- aGGGGGACgggguaggccgugCCCgUUCCCagaCGugGCCg -3'
miRNA:   3'- -UCCCUUGa------------GGGaGAGGGg--GCugCGGg -5'
5548 5' -61.7 NC_001806.1 + 5323 0.66 0.665461
Target:  5'- cAGGGAcgGCcgaUCCCcCUCCCgCGcuuCGUCCg -3'
miRNA:   3'- -UCCCU--UG---AGGGaGAGGGgGCu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 102960 0.66 0.68485
Target:  5'- cGGGGGCgCC----CCCCCGuCGCCCc -3'
miRNA:   3'- uCCCUUGaGGgagaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 62803 0.66 0.694489
Target:  5'- aGGGGGGCaaagCCCUCg---CUGACGUCCg -3'
miRNA:   3'- -UCCCUUGa---GGGAGagggGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 79172 0.66 0.666434
Target:  5'- gGGGGAGCuauUCCCggggcaUCcgguguaccagcgcgCCCCCGACGaCCa -3'
miRNA:   3'- -UCCCUUG---AGGG------AGa--------------GGGGGCUGCgGG- -5'
5548 5' -61.7 NC_001806.1 + 150109 0.66 0.675172
Target:  5'- cGGGGcGGC-CCCg-UCCccggggaccaaCCCGGCGCCCc -3'
miRNA:   3'- -UCCC-UUGaGGGagAGG-----------GGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5770 0.66 0.665461
Target:  5'- cAGGGGGCggggCCCggg-CCCCGACuuCCCg -3'
miRNA:   3'- -UCCCUUGa---GGGagagGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 55251 0.66 0.694489
Target:  5'- gAGGGucGGCgCCCgggCcggCCCCCucCGCCCa -3'
miRNA:   3'- -UCCC--UUGaGGGa--Ga--GGGGGcuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 56687 0.66 0.70408
Target:  5'- gGGGGGACgggggCCCgggaaCCCCGGguCGCUCu -3'
miRNA:   3'- -UCCCUUGa----GGGagag-GGGGCU--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 107816 0.66 0.70408
Target:  5'- gGGGGAucggcuacaaGCUCaCCggCgucgaCgUCCGACGCCCa -3'
miRNA:   3'- -UCCCU----------UGAG-GGa-Ga----GgGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 68465 0.66 0.70408
Target:  5'- uGGuGGcuCUCCC-CgaggCCCCCGACcagGCCUu -3'
miRNA:   3'- -UC-CCuuGAGGGaGa---GGGGGCUG---CGGG- -5'
5548 5' -61.7 NC_001806.1 + 32967 0.66 0.655726
Target:  5'- -cGGGGC-CCCUUgggUCCgCCGGgGCCCc -3'
miRNA:   3'- ucCCUUGaGGGAG---AGGgGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 127953 0.66 0.683884
Target:  5'- gAGGGcgacgcgGACUCCCgUCUgagCCCCCGgccacuGCGUCUc -3'
miRNA:   3'- -UCCC-------UUGAGGG-AGA---GGGGGC------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.