Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 141100 | 1.11 | 0.000683 |
Target: 5'- gAGGGAACUCCCUCUCCCCCGACGCCCg -3' miRNA: 3'- -UCCCUUGAGGGAGAGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 69245 | 0.82 | 0.078005 |
Target: 5'- cGGGGAGCagCC-CUCCgCCGGCGCCCa -3' miRNA: 3'- -UCCCUUGagGGaGAGGgGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 146614 | 0.76 | 0.184553 |
Target: 5'- cGGGGGGCgucccuuauuguuuUCCCUCgUCCCgggUCGACGCCCc -3' miRNA: 3'- -UCCCUUG--------------AGGGAG-AGGG---GGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 7398 | 0.76 | 0.185882 |
Target: 5'- cAGGGAGC-CCCggUCUCCCCgGGaGCCCc -3' miRNA: 3'- -UCCCUUGaGGG--AGAGGGGgCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 58999 | 0.76 | 0.190374 |
Target: 5'- cAGGGcGC-CCC-CUCCUCCGGCuGCCCg -3' miRNA: 3'- -UCCCuUGaGGGaGAGGGGGCUG-CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 104035 | 0.75 | 0.224545 |
Target: 5'- cAGGGAguggcgcaGCUgCUUCaUCCCCGugGCCCg -3' miRNA: 3'- -UCCCU--------UGAgGGAGaGGGGGCugCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30818 | 0.75 | 0.240721 |
Target: 5'- gAGGGAGacaagaggaaacCUCCCUCggCCCCCG-CGCUg -3' miRNA: 3'- -UCCCUU------------GAGGGAGa-GGGGGCuGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 106886 | 0.74 | 0.263786 |
Target: 5'- cAGGGcccGCgcccCCCUCUCUUCUGGCGCCUa -3' miRNA: 3'- -UCCCu--UGa---GGGAGAGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 148815 | 0.74 | 0.275977 |
Target: 5'- gGGGGGGCUCC----CCCCCGAgacCGCCCc -3' miRNA: 3'- -UCCCUUGAGGgagaGGGGGCU---GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 87407 | 0.74 | 0.282239 |
Target: 5'- -cGGAcGCUUgggcgCCUCcCCCCCGGCGCCCc -3' miRNA: 3'- ucCCU-UGAG-----GGAGaGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 151118 | 0.73 | 0.288614 |
Target: 5'- cGGGGGGCUCCggCgCCCCCucccCGCCCg -3' miRNA: 3'- -UCCCUUGAGGgaGaGGGGGcu--GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 78543 | 0.73 | 0.297727 |
Target: 5'- gGGGGGGCgcgaggcgucacccCCCgCUCCCCCcaACGCCCu -3' miRNA: 3'- -UCCCUUGa-------------GGGaGAGGGGGc-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 129637 | 0.73 | 0.308414 |
Target: 5'- uGGGGAccgaGCUCCUgcaggCUgCCCUG-CGCCCg -3' miRNA: 3'- -UCCCU----UGAGGGa----GAgGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 147086 | 0.73 | 0.322181 |
Target: 5'- cGGGcacACUUCCUCggCCCCCG-CgGCCCa -3' miRNA: 3'- uCCCu--UGAGGGAGa-GGGGGCuG-CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 19722 | 0.72 | 0.329234 |
Target: 5'- cGGGuGAGCcCCCUCcuccgCCCCCG-CGUCCc -3' miRNA: 3'- -UCC-CUUGaGGGAGa----GGGGGCuGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 3678 | 0.72 | 0.351074 |
Target: 5'- -cGGGGCUCCC-CgcggCCCCCGucaGCGCCg -3' miRNA: 3'- ucCCUUGAGGGaGa---GGGGGC---UGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 118903 | 0.72 | 0.366196 |
Target: 5'- gGGGGAGCUUCUgg-CCCCCGuCGUgCCg -3' miRNA: 3'- -UCCCUUGAGGGagaGGGGGCuGCG-GG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 96515 | 0.71 | 0.373146 |
Target: 5'- cGGGGGcccugccacuccgGCgccgCCCg--CCCCUGGCGCCCc -3' miRNA: 3'- -UCCCU-------------UGa---GGGagaGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 22924 | 0.71 | 0.373923 |
Target: 5'- gAGGGAcccGCgggCCCcgCUUCCCCGccGCGCCg -3' miRNA: 3'- -UCCCU---UGa--GGGa-GAGGGGGC--UGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 140448 | 0.71 | 0.373923 |
Target: 5'- gGGGGGGCgguuaCUCggCCCCCGAgGCCa -3' miRNA: 3'- -UCCCUUGagg--GAGa-GGGGGCUgCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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