miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 2287 0.69 0.492904
Target:  5'- cGGcGGAccACUCCggCggccCCCCCGAgGCCCc -3'
miRNA:   3'- -UC-CCU--UGAGGgaGa---GGGGGCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 3678 0.72 0.351074
Target:  5'- -cGGGGCUCCC-CgcggCCCCCGucaGCGCCg -3'
miRNA:   3'- ucCCUUGAGGGaGa---GGGGGC---UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 4722 0.68 0.549004
Target:  5'- cGGGGcCUCCCguUCgcggCCCCgGGCcgggGCCCg -3'
miRNA:   3'- uCCCUuGAGGG--AGa---GGGGgCUG----CGGG- -5'
5548 5' -61.7 NC_001806.1 + 5017 0.68 0.577812
Target:  5'- cGGGGucgUCCCcgccCUCCUCCGucuccGCGCCCc -3'
miRNA:   3'- -UCCCuugAGGGa---GAGGGGGC-----UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5125 0.71 0.39776
Target:  5'- cGGGGcGCUgCUUgUUCUCCGACGCCa -3'
miRNA:   3'- -UCCCuUGAgGGAgAGGGGGCUGCGGg -5'
5548 5' -61.7 NC_001806.1 + 5236 0.71 0.414183
Target:  5'- gAGGGGGCgagaCCCaCggaCCCCGACGaCCCc -3'
miRNA:   3'- -UCCCUUGa---GGGaGag-GGGGCUGC-GGG- -5'
5548 5' -61.7 NC_001806.1 + 5323 0.66 0.665461
Target:  5'- cAGGGAcgGCcgaUCCCcCUCCCgCGcuuCGUCCg -3'
miRNA:   3'- -UCCCU--UG---AGGGaGAGGGgGCu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 5770 0.66 0.665461
Target:  5'- cAGGGGGCggggCCCggg-CCCCGACuuCCCg -3'
miRNA:   3'- -UCCCUUGa---GGGagagGGGGCUGc-GGG- -5'
5548 5' -61.7 NC_001806.1 + 6097 0.68 0.558562
Target:  5'- cGGGGGGCgggUCUCUCcggcgcacauaaaggCCCggcgcgaCCGACGCCCg -3'
miRNA:   3'- -UCCCUUG---AGGGAGa--------------GGG-------GGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 6334 0.67 0.625471
Target:  5'- cAGGGGACgcacCCCgggggCCUCCGACGacagaaaCCCa -3'
miRNA:   3'- -UCCCUUGa---GGGaga--GGGGGCUGC-------GGG- -5'
5548 5' -61.7 NC_001806.1 + 6818 0.67 0.636212
Target:  5'- -cGGAGCgUCCCcugcugcgCUCUCCCGGgcugcUGCCCg -3'
miRNA:   3'- ucCCUUG-AGGGa-------GAGGGGGCU-----GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 6979 0.66 0.70408
Target:  5'- cGGaGGGugUUCC---CCCCCGugGCUCu -3'
miRNA:   3'- -UC-CCUugAGGGagaGGGGGCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 7398 0.76 0.185882
Target:  5'- cAGGGAGC-CCCggUCUCCCCgGGaGCCCc -3'
miRNA:   3'- -UCCCUUGaGGG--AGAGGGGgCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 14759 0.68 0.587492
Target:  5'- uGGGcuCUCCCcaUCCCCCG-C-CCCa -3'
miRNA:   3'- uCCCuuGAGGGagAGGGGGCuGcGGG- -5'
5548 5' -61.7 NC_001806.1 + 17133 0.7 0.431017
Target:  5'- -----cCUCCC-CUCCCCCGgACGCCUc -3'
miRNA:   3'- ucccuuGAGGGaGAGGGGGC-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 19722 0.72 0.329234
Target:  5'- cGGGuGAGCcCCCUCcuccgCCCCCG-CGUCCc -3'
miRNA:   3'- -UCC-CUUGaGGGAGa----GGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 19945 0.67 0.606935
Target:  5'- gGGGuGGGCgggUCUUCcCCCCCG-CGUCCg -3'
miRNA:   3'- -UCC-CUUGa--GGGAGaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 20150 0.66 0.675172
Target:  5'- -cGGAGagaCCCgC-CCCCCGcCGCCCg -3'
miRNA:   3'- ucCCUUga-GGGaGaGGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 20336 0.67 0.649876
Target:  5'- gGGGGGGCggcaaggcgggcggCCCUUgggCCgCCCGcCGUCCc -3'
miRNA:   3'- -UCCCUUGa-------------GGGAGa--GG-GGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 22724 0.66 0.694489
Target:  5'- cGGGGGGCga-Cga--CCCCGACGCCg -3'
miRNA:   3'- -UCCCUUGaggGagagGGGGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.