miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 5' -61.7 NC_001806.1 + 107816 0.66 0.70408
Target:  5'- gGGGGAucggcuacaaGCUCaCCggCgucgaCgUCCGACGCCCa -3'
miRNA:   3'- -UCCCU----------UGAG-GGa-Ga----GgGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 129637 0.73 0.308414
Target:  5'- uGGGGAccgaGCUCCUgcaggCUgCCCUG-CGCCCg -3'
miRNA:   3'- -UCCCU----UGAGGGa----GAgGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 147086 0.73 0.322181
Target:  5'- cGGGcacACUUCCUCggCCCCCG-CgGCCCa -3'
miRNA:   3'- uCCCu--UGAGGGAGa-GGGGGCuG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 19722 0.72 0.329234
Target:  5'- cGGGuGAGCcCCCUCcuccgCCCCCG-CGUCCc -3'
miRNA:   3'- -UCC-CUUGaGGGAGa----GGGGGCuGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 3678 0.72 0.351074
Target:  5'- -cGGGGCUCCC-CgcggCCCCCGucaGCGCCg -3'
miRNA:   3'- ucCCUUGAGGGaGa---GGGGGC---UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 118903 0.72 0.366196
Target:  5'- gGGGGAGCUUCUgg-CCCCCGuCGUgCCg -3'
miRNA:   3'- -UCCCUUGAGGGagaGGGGGCuGCG-GG- -5'
5548 5' -61.7 NC_001806.1 + 96515 0.71 0.373146
Target:  5'- cGGGGGcccugccacuccgGCgccgCCCg--CCCCUGGCGCCCc -3'
miRNA:   3'- -UCCCU-------------UGa---GGGagaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 22924 0.71 0.373923
Target:  5'- gAGGGAcccGCgggCCCcgCUUCCCCGccGCGCCg -3'
miRNA:   3'- -UCCCU---UGa--GGGa-GAGGGGGC--UGCGGg -5'
5548 5' -61.7 NC_001806.1 + 140448 0.71 0.373923
Target:  5'- gGGGGGGCgguuaCUCggCCCCCGAgGCCa -3'
miRNA:   3'- -UCCCUUGagg--GAGa-GGGGGCUgCGGg -5'
5548 5' -61.7 NC_001806.1 + 78543 0.73 0.297727
Target:  5'- gGGGGGGCgcgaggcgucacccCCCgCUCCCCCcaACGCCCu -3'
miRNA:   3'- -UCCCUUGa-------------GGGaGAGGGGGc-UGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 151118 0.73 0.288614
Target:  5'- cGGGGGGCUCCggCgCCCCCucccCGCCCg -3'
miRNA:   3'- -UCCCUUGAGGgaGaGGGGGcu--GCGGG- -5'
5548 5' -61.7 NC_001806.1 + 87407 0.74 0.282239
Target:  5'- -cGGAcGCUUgggcgCCUCcCCCCCGGCGCCCc -3'
miRNA:   3'- ucCCU-UGAG-----GGAGaGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 69245 0.82 0.078005
Target:  5'- cGGGGAGCagCC-CUCCgCCGGCGCCCa -3'
miRNA:   3'- -UCCCUUGagGGaGAGGgGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 146614 0.76 0.184553
Target:  5'- cGGGGGGCgucccuuauuguuuUCCCUCgUCCCgggUCGACGCCCc -3'
miRNA:   3'- -UCCCUUG--------------AGGGAG-AGGG---GGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 7398 0.76 0.185882
Target:  5'- cAGGGAGC-CCCggUCUCCCCgGGaGCCCc -3'
miRNA:   3'- -UCCCUUGaGGG--AGAGGGGgCUgCGGG- -5'
5548 5' -61.7 NC_001806.1 + 58999 0.76 0.190374
Target:  5'- cAGGGcGC-CCC-CUCCUCCGGCuGCCCg -3'
miRNA:   3'- -UCCCuUGaGGGaGAGGGGGCUG-CGGG- -5'
5548 5' -61.7 NC_001806.1 + 104035 0.75 0.224545
Target:  5'- cAGGGAguggcgcaGCUgCUUCaUCCCCGugGCCCg -3'
miRNA:   3'- -UCCCU--------UGAgGGAGaGGGGGCugCGGG- -5'
5548 5' -61.7 NC_001806.1 + 30818 0.75 0.240721
Target:  5'- gAGGGAGacaagaggaaacCUCCCUCggCCCCCG-CGCUg -3'
miRNA:   3'- -UCCCUU------------GAGGGAGa-GGGGGCuGCGGg -5'
5548 5' -61.7 NC_001806.1 + 106886 0.74 0.263786
Target:  5'- cAGGGcccGCgcccCCCUCUCUUCUGGCGCCUa -3'
miRNA:   3'- -UCCCu--UGa---GGGAGAGGGGGCUGCGGG- -5'
5548 5' -61.7 NC_001806.1 + 148815 0.74 0.275977
Target:  5'- gGGGGGGCUCC----CCCCCGAgacCGCCCc -3'
miRNA:   3'- -UCCCUUGAGGgagaGGGGGCU---GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.