miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 97352 0.66 0.723119
Target:  5'- cGCGAccucaccaccAAG-GCCCGG---GCCACGGCg -3'
miRNA:   3'- -CGCU----------UUCgCGGGCCucgCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 10721 0.66 0.732591
Target:  5'- uCGccAGCGggaCCGGAGCGCgCAUGcacGCCg -3'
miRNA:   3'- cGCuuUCGCg--GGCCUCGCG-GUGC---CGG- -5'
5550 3' -60.8 NC_001806.1 + 65444 0.66 0.694303
Target:  5'- -aGGGAGCG---GGGGaUGCCGCGGCCc -3'
miRNA:   3'- cgCUUUCGCgggCCUC-GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 129709 0.66 0.713575
Target:  5'- --cGGAG-GCCCGGGGgGCCACGuuCu -3'
miRNA:   3'- cgcUUUCgCGGGCCUCgCGGUGCcgG- -5'
5550 3' -60.8 NC_001806.1 + 27827 0.66 0.698175
Target:  5'- uUGggGGCGCCgGGuugguccccggggacGGgGCCGCcccgcggugGGCCu -3'
miRNA:   3'- cGCuuUCGCGGgCC---------------UCgCGGUG---------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 70818 0.66 0.741982
Target:  5'- ----uAGCGCgCUGGcGGCGUCuguCGGCCu -3'
miRNA:   3'- cgcuuUCGCG-GGCC-UCGCGGu--GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 77847 0.66 0.732591
Target:  5'- gGCGAGauggGGgGCCUcgauGGA-UGCgGCGGCCg -3'
miRNA:   3'- -CGCUU----UCgCGGG----CCUcGCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 8671 0.66 0.745714
Target:  5'- aGCG-GAGCaGCCacaucaGGAGCGCCccaAauccgcccgacagaaCGGCCa -3'
miRNA:   3'- -CGCuUUCG-CGGg-----CCUCGCGG---U---------------GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 114814 0.67 0.64542
Target:  5'- uCGGAGcGCGCgUCGGAgGCGuacuuCCugGGCCa -3'
miRNA:   3'- cGCUUU-CGCG-GGCCU-CGC-----GGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 111189 0.67 0.655246
Target:  5'- uGCGcacacGGGC-CCUGGGGauaGCCugcGCGGCCg -3'
miRNA:   3'- -CGCu----UUCGcGGGCCUCg--CGG---UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 35273 0.67 0.665055
Target:  5'- cGCGGGAGuCGUggcuUUGGGGCGCaucCAUGGCUu -3'
miRNA:   3'- -CGCUUUC-GCG----GGCCUCGCG---GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 139552 0.67 0.655246
Target:  5'- -----cGCuCCgGGAGCGCCACGaGCg -3'
miRNA:   3'- cgcuuuCGcGGgCCUCGCGGUGC-CGg -5'
5550 3' -60.8 NC_001806.1 + 72675 0.67 0.664075
Target:  5'- -aGAggccAAGCGCCCGaaucGGGCGCCcgacgauguauggGCGGUg -3'
miRNA:   3'- cgCU----UUCGCGGGC----CUCGCGG-------------UGCCGg -5'
5550 3' -60.8 NC_001806.1 + 101015 0.67 0.659172
Target:  5'- cGgGAGAGCggcgGCCCGcGgcgcucgaaaaucgcAGCGCUgGCGGCCg -3'
miRNA:   3'- -CgCUUUCG----CGGGC-C---------------UCGCGG-UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 114350 0.67 0.655246
Target:  5'- uCGgcGGCGCCCGacgcGGGCGCCAacaCCg -3'
miRNA:   3'- cGCuuUCGCGGGC----CUCGCGGUgccGG- -5'
5550 3' -60.8 NC_001806.1 + 3347 0.67 0.665055
Target:  5'- cGCGggGG-GCUgGcGGGCcggGCCcCGGCCa -3'
miRNA:   3'- -CGCuuUCgCGGgC-CUCG---CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 96712 0.67 0.655246
Target:  5'- aCGu--GUGCCCaccccccacGGGCGCCACGGUg -3'
miRNA:   3'- cGCuuuCGCGGGc--------CUCGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 102566 0.67 0.659172
Target:  5'- cCGAAcGUGaCCGGAGCGCggucgcuaucgucgGCGGCCc -3'
miRNA:   3'- cGCUUuCGCgGGCCUCGCGg-------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 122658 0.67 0.64542
Target:  5'- gGCGAAAG-GCuUCGGAGCGgUggAgGGCCu -3'
miRNA:   3'- -CGCUUUCgCG-GGCCUCGCgG--UgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 45286 0.67 0.665055
Target:  5'- gGCGGGAGacgcggGCCCgcgcggGGAGcCGCC-CGGCg -3'
miRNA:   3'- -CGCUUUCg-----CGGG------CCUC-GCGGuGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.