Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5551 | 5' | -56.8 | NC_001806.1 | + | 1754 | 0.75 | 0.403187 |
Target: 5'- --gGCGGUACUCGCGCGGggaCAUGGg- -3' miRNA: 3'- ucaUGCCGUGGGCGCGCUa--GUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 3477 | 0.66 | 0.860026 |
Target: 5'- gGGcGCGGCGCCCGgCGUcGUCGUcGGc- -3' miRNA: 3'- -UCaUGCCGUGGGC-GCGcUAGUA-CCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 4010 | 0.71 | 0.593907 |
Target: 5'- uGUACaGCAgCCGCGUGAUCA-GGg- -3' miRNA: 3'- uCAUGcCGUgGGCGCGCUAGUaCCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 5402 | 0.68 | 0.74558 |
Target: 5'- --gGCGGU-CCCGCGUcgGGUCGUGGa- -3' miRNA: 3'- ucaUGCCGuGGGCGCG--CUAGUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 16743 | 0.7 | 0.634843 |
Target: 5'- --cGCGGCAUCCGCGCuggGGUCGUccucuauggGGUAg -3' miRNA: 3'- ucaUGCCGUGGGCGCG---CUAGUA---------CCAU- -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 23020 | 0.67 | 0.827768 |
Target: 5'- uGGUGCucauGCGCCUGCGCGGggaccugcgCGUGGc- -3' miRNA: 3'- -UCAUGc---CGUGGGCGCGCUa--------GUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 25919 | 0.66 | 0.852255 |
Target: 5'- cGGgcgGCGuGCGCgCGCGCGGcgggCGUGGg- -3' miRNA: 3'- -UCa--UGC-CGUGgGCGCGCUa---GUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 30216 | 0.67 | 0.801676 |
Target: 5'- --cGCGcGCcCCCGCGCGGcCGUGGc- -3' miRNA: 3'- ucaUGC-CGuGGGCGCGCUaGUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 32225 | 0.73 | 0.475361 |
Target: 5'- aGGcACGcGCACCCGCGCGGcCA-GGUGg -3' miRNA: 3'- -UCaUGC-CGUGGGCGCGCUaGUaCCAU- -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 35313 | 0.66 | 0.874944 |
Target: 5'- --gGCGGCgcaACCCGaCGCGGguUUAUGGa- -3' miRNA: 3'- ucaUGCCG---UGGGC-GCGCU--AGUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 42520 | 0.66 | 0.860026 |
Target: 5'- cGGUacGCGGCAagcaCGCGCaccUCGUGGUGg -3' miRNA: 3'- -UCA--UGCCGUgg--GCGCGcu-AGUACCAU- -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 46902 | 0.66 | 0.842666 |
Target: 5'- aGGUAgGgGCgGCCCGUGCGGguugcuuaaaugCGUGGUGg -3' miRNA: 3'- -UCAUgC-CG-UGGGCGCGCUa-----------GUACCAU- -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 51024 | 0.67 | 0.826923 |
Target: 5'- --aGCGGCggguccguguuggGCCCGCGgGuccgCGUGGUGg -3' miRNA: 3'- ucaUGCCG-------------UGGGCGCgCua--GUACCAU- -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 53876 | 0.66 | 0.852255 |
Target: 5'- uGUuuGGCAgCCGCGCGGggaUCAgGGUc -3' miRNA: 3'- uCAugCCGUgGGCGCGCU---AGUaCCAu -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 56654 | 0.67 | 0.810539 |
Target: 5'- cGgcCGGCgGCCCGUGgGAUCGuUGGg- -3' miRNA: 3'- uCauGCCG-UGGGCGCgCUAGU-ACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 60501 | 0.71 | 0.573577 |
Target: 5'- --gGCGGCACCgagaCGCGCGucUCGUGGa- -3' miRNA: 3'- ucaUGCCGUGG----GCGCGCu-AGUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 65470 | 0.69 | 0.703056 |
Target: 5'- gGGUccugGgGGCGCCCGCGCaccacgucuccgucGAugaUCAUGGUGc -3' miRNA: 3'- -UCA----UgCCGUGGGCGCG--------------CU---AGUACCAU- -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 74067 | 0.67 | 0.810539 |
Target: 5'- aGGUGCGGacccagGCCCGUcggGCGAUCGaGGg- -3' miRNA: 3'- -UCAUGCCg-----UGGGCG---CGCUAGUaCCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 77398 | 0.67 | 0.827768 |
Target: 5'- --gGCGGCcgcGCCCGCGCcccugcUCGUGGa- -3' miRNA: 3'- ucaUGCCG---UGGGCGCGcu----AGUACCau -5' |
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5551 | 5' | -56.8 | NC_001806.1 | + | 82545 | 0.67 | 0.836119 |
Target: 5'- --cAUGGCGCCCGCGaUGGgagCGUGcGUGc -3' miRNA: 3'- ucaUGCCGUGGGCGC-GCUa--GUAC-CAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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