miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 5' -56.8 NC_001806.1 + 42520 0.66 0.860026
Target:  5'- cGGUacGCGGCAagcaCGCGCaccUCGUGGUGg -3'
miRNA:   3'- -UCA--UGCCGUgg--GCGCGcu-AGUACCAU- -5'
5551 5' -56.8 NC_001806.1 + 35313 0.66 0.874944
Target:  5'- --gGCGGCgcaACCCGaCGCGGguUUAUGGa- -3'
miRNA:   3'- ucaUGCCG---UGGGC-GCGCU--AGUACCau -5'
5551 5' -56.8 NC_001806.1 + 32225 0.73 0.475361
Target:  5'- aGGcACGcGCACCCGCGCGGcCA-GGUGg -3'
miRNA:   3'- -UCaUGC-CGUGGGCGCGCUaGUaCCAU- -5'
5551 5' -56.8 NC_001806.1 + 30216 0.67 0.801676
Target:  5'- --cGCGcGCcCCCGCGCGGcCGUGGc- -3'
miRNA:   3'- ucaUGC-CGuGGGCGCGCUaGUACCau -5'
5551 5' -56.8 NC_001806.1 + 25919 0.66 0.852255
Target:  5'- cGGgcgGCGuGCGCgCGCGCGGcgggCGUGGg- -3'
miRNA:   3'- -UCa--UGC-CGUGgGCGCGCUa---GUACCau -5'
5551 5' -56.8 NC_001806.1 + 23020 0.67 0.827768
Target:  5'- uGGUGCucauGCGCCUGCGCGGggaccugcgCGUGGc- -3'
miRNA:   3'- -UCAUGc---CGUGGGCGCGCUa--------GUACCau -5'
5551 5' -56.8 NC_001806.1 + 16743 0.7 0.634843
Target:  5'- --cGCGGCAUCCGCGCuggGGUCGUccucuauggGGUAg -3'
miRNA:   3'- ucaUGCCGUGGGCGCG---CUAGUA---------CCAU- -5'
5551 5' -56.8 NC_001806.1 + 5402 0.68 0.74558
Target:  5'- --gGCGGU-CCCGCGUcgGGUCGUGGa- -3'
miRNA:   3'- ucaUGCCGuGGGCGCG--CUAGUACCau -5'
5551 5' -56.8 NC_001806.1 + 4010 0.71 0.593907
Target:  5'- uGUACaGCAgCCGCGUGAUCA-GGg- -3'
miRNA:   3'- uCAUGcCGUgGGCGCGCUAGUaCCau -5'
5551 5' -56.8 NC_001806.1 + 3477 0.66 0.860026
Target:  5'- gGGcGCGGCGCCCGgCGUcGUCGUcGGc- -3'
miRNA:   3'- -UCaUGCCGUGGGC-GCGcUAGUA-CCau -5'
5551 5' -56.8 NC_001806.1 + 1754 0.75 0.403187
Target:  5'- --gGCGGUACUCGCGCGGggaCAUGGg- -3'
miRNA:   3'- ucaUGCCGUGGGCGCGCUa--GUACCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.