miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 139361 1.08 0.003054
Target:  5'- gGAGCUGGCCAUGGCCAUAAACGCCGAc -3'
miRNA:   3'- -CUCGACCGGUACCGGUAUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 22454 0.81 0.191798
Target:  5'- cGGCggccGCCGUGGCCAUGAGcCGCCGAu -3'
miRNA:   3'- cUCGac--CGGUACCGGUAUUU-GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 75308 0.79 0.252236
Target:  5'- uAGC-GGCCAUGGCCGacAGCGCCGc -3'
miRNA:   3'- cUCGaCCGGUACCGGUauUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 132731 0.76 0.383465
Target:  5'- cGAGCUGGCCcggcGUGGCCucggcGGCaGCCGGa -3'
miRNA:   3'- -CUCGACCGG----UACCGGuau--UUG-CGGCU- -5'
5552 3' -55.5 NC_001806.1 + 22884 0.75 0.427141
Target:  5'- gGGGCUGGCCggGGCCcgGccCGCCa- -3'
miRNA:   3'- -CUCGACCGGuaCCGGuaUuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 133002 0.74 0.454721
Target:  5'- aGAGCccugGGCCggGGCCGUcuugGAGCGCCu- -3'
miRNA:   3'- -CUCGa---CCGGuaCCGGUA----UUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 117984 0.74 0.473632
Target:  5'- aGGCUcgGGUguUGGCCGUGAACGCgGGa -3'
miRNA:   3'- cUCGA--CCGguACCGGUAUUUGCGgCU- -5'
5552 3' -55.5 NC_001806.1 + 119906 0.73 0.512583
Target:  5'- -cGCUGGCCAcGGCCcUGAccgaggccuGCGCCGc -3'
miRNA:   3'- cuCGACCGGUaCCGGuAUU---------UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 51785 0.73 0.52253
Target:  5'- aGAGCggGGCCGUggcGGCCAaguACGCCGc -3'
miRNA:   3'- -CUCGa-CCGGUA---CCGGUauuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 66822 0.73 0.53255
Target:  5'- gGGGCcGGCCcggGUGGCCGguguGCGCCGc -3'
miRNA:   3'- -CUCGaCCGG---UACCGGUauu-UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 77149 0.73 0.542638
Target:  5'- gGAGCUcggggGGCgCGUGGCCcaacACGCCGAc -3'
miRNA:   3'- -CUCGA-----CCG-GUACCGGuauuUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 22044 0.73 0.542638
Target:  5'- cAGCgggGaGCCGUGGCCc--GGCGCCGGg -3'
miRNA:   3'- cUCGa--C-CGGUACCGGuauUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 151304 0.72 0.583553
Target:  5'- cGGCggugGGCCG-GGCCucuGGCGCCGGc -3'
miRNA:   3'- cUCGa---CCGGUaCCGGuauUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 138442 0.72 0.593889
Target:  5'- cAGCUGGUCGUGGCCcgcaacGACGUCa- -3'
miRNA:   3'- cUCGACCGGUACCGGuau---UUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 23479 0.72 0.604254
Target:  5'- cGGCgcaGGCCcgcccgcgccccGUGGCCGUGucGCGCCGGc -3'
miRNA:   3'- cUCGa--CCGG------------UACCGGUAUu-UGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 40704 0.72 0.61464
Target:  5'- aAGCgcaGGCUGUGGCCGUGGGCGUa-- -3'
miRNA:   3'- cUCGa--CCGGUACCGGUAUUUGCGgcu -5'
5552 3' -55.5 NC_001806.1 + 148070 0.71 0.62504
Target:  5'- -uGCU-GCCguGUGGCCcgAUGGGCGCCGAg -3'
miRNA:   3'- cuCGAcCGG--UACCGG--UAUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 91054 0.71 0.62504
Target:  5'- -cGcCUGGCCuccgucAUGGCCGgAGACGCCGc -3'
miRNA:   3'- cuC-GACCGG------UACCGGUaUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 43632 0.71 0.62504
Target:  5'- gGAGCaUGGCCgagagugacGUGGUCAUGGAggauguggccauCGCCGAa -3'
miRNA:   3'- -CUCG-ACCGG---------UACCGGUAUUU------------GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 74651 0.71 0.635446
Target:  5'- cGGCaGGCgCG-GGCCAUGGAUGCCGc -3'
miRNA:   3'- cUCGaCCG-GUaCCGGUAUUUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.