miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 2771 0.69 0.755592
Target:  5'- cGGGCgGGCCugcgccgcggcGGCCcgGGGCGCCGc -3'
miRNA:   3'- -CUCGaCCGGua---------CCGGuaUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 2817 0.68 0.830809
Target:  5'- gGGGCgGGCUcgGGCCccggGGGCGUgGAg -3'
miRNA:   3'- -CUCGaCCGGuaCCGGua--UUUGCGgCU- -5'
5552 3' -55.5 NC_001806.1 + 3360 0.68 0.804496
Target:  5'- cGGGCcgGGCCccGGCCAgccccgGGACgGCCGc -3'
miRNA:   3'- -CUCGa-CCGGuaCCGGUa-----UUUG-CGGCu -5'
5552 3' -55.5 NC_001806.1 + 4738 0.67 0.8782
Target:  5'- cGGCcccgGGCCggGGCCcgGu-CGCCGGc -3'
miRNA:   3'- cUCGa---CCGGuaCCGGuaUuuGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 11475 0.67 0.87528
Target:  5'- aGGCgGGCCAUGGCCGcuucguucaccGCGCaUGAg -3'
miRNA:   3'- cUCGaCCGGUACCGGUauu--------UGCG-GCU- -5'
5552 3' -55.5 NC_001806.1 + 16470 0.67 0.847431
Target:  5'- cAGCuUGGCCAUGGUCGagggGGGCuuGCCGc -3'
miRNA:   3'- cUCG-ACCGGUACCGGUa---UUUG--CGGCu -5'
5552 3' -55.5 NC_001806.1 + 17606 0.66 0.911542
Target:  5'- aGAGCa--CCGaGGUCGUGGACGCCGu -3'
miRNA:   3'- -CUCGaccGGUaCCGGUAUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 21907 0.67 0.847431
Target:  5'- cGAGCgccgccgGGCCcgcgcggcgGUGGCCGgccgcGACGCCa- -3'
miRNA:   3'- -CUCGa------CCGG---------UACCGGUau---UUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 22044 0.73 0.542638
Target:  5'- cAGCgggGaGCCGUGGCCc--GGCGCCGGg -3'
miRNA:   3'- cUCGa--C-CGGUACCGGuauUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 22454 0.81 0.191798
Target:  5'- cGGCggccGCCGUGGCCAUGAGcCGCCGAu -3'
miRNA:   3'- cUCGac--CGGUACCGGUAUUU-GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 22844 0.67 0.847431
Target:  5'- -cGCUGGCCGagGGCUuc-GACGgCGAc -3'
miRNA:   3'- cuCGACCGGUa-CCGGuauUUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 22884 0.75 0.427141
Target:  5'- gGGGCUGGCCggGGCCcgGccCGCCa- -3'
miRNA:   3'- -CUCGACCGGuaCCGGuaUuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 23068 0.67 0.855443
Target:  5'- aGGCc-GCCGUGGCCGccgUGcGCGCCGu -3'
miRNA:   3'- cUCGacCGGUACCGGU---AUuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 23209 0.66 0.905352
Target:  5'- -uGCUGGCgGcggcGGCCAgcgcaccGGACGCCGc -3'
miRNA:   3'- cuCGACCGgUa---CCGGUa------UUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 23479 0.72 0.604254
Target:  5'- cGGCgcaGGCCcgcccgcgccccGUGGCCGUGucGCGCCGGc -3'
miRNA:   3'- cUCGa--CCGG------------UACCGGUAUu-UGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 23695 0.66 0.898919
Target:  5'- -cGCgGGCCcUGGCCucgauCGCCGc -3'
miRNA:   3'- cuCGaCCGGuACCGGuauuuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 24299 0.67 0.870833
Target:  5'- -cGCUGGCCGgcGGCgCGggaccuGCGCCGc -3'
miRNA:   3'- cuCGACCGGUa-CCG-GUauu---UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 26994 0.71 0.666612
Target:  5'- cGAGCgGGCCGaccgGGCUcgGuuccGGCGCCGGg -3'
miRNA:   3'- -CUCGaCCGGUa---CCGGuaU----UUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 30228 0.7 0.717854
Target:  5'- -cGC-GGCCGUGGCCccgugcgugcGAGCGCCGc -3'
miRNA:   3'- cuCGaCCGGUACCGGua--------UUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 32955 0.66 0.892247
Target:  5'- gGGGCcccgGGCCggGGCCccuUGGGucCGCCGGg -3'
miRNA:   3'- -CUCGa---CCGGuaCCGGu--AUUU--GCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.