miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 59891 0.66 0.885339
Target:  5'- cGAGgaGGCCAgugaCGUGGACGCCu- -3'
miRNA:   3'- -CUCgaCCGGUaccgGUAUUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 115143 0.66 0.885339
Target:  5'- aGGGaUGGaCCAcGGCCA-GGACGCCGu -3'
miRNA:   3'- -CUCgACC-GGUaCCGGUaUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 117882 0.66 0.885339
Target:  5'- cGGCgggGGCCGaGcCCGUGAGCGCgCGGa -3'
miRNA:   3'- cUCGa--CCGGUaCcGGUAUUUGCG-GCU- -5'
5552 3' -55.5 NC_001806.1 + 68660 0.67 0.8782
Target:  5'- aGAGCU-GCU-UGGCCAUGAGC-CCGc -3'
miRNA:   3'- -CUCGAcCGGuACCGGUAUUUGcGGCu -5'
5552 3' -55.5 NC_001806.1 + 4738 0.67 0.8782
Target:  5'- cGGCcccgGGCCggGGCCcgGu-CGCCGGc -3'
miRNA:   3'- cUCGa---CCGGuaCCGGuaUuuGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 11475 0.67 0.87528
Target:  5'- aGGCgGGCCAUGGCCGcuucguucaccGCGCaUGAg -3'
miRNA:   3'- cUCGaCCGGUACCGGUauu--------UGCG-GCU- -5'
5552 3' -55.5 NC_001806.1 + 24299 0.67 0.870833
Target:  5'- -cGCUGGCCGgcGGCgCGggaccuGCGCCGc -3'
miRNA:   3'- cuCGACCGGUa-CCG-GUauu---UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 74900 0.67 0.863246
Target:  5'- cGGGCUGGUCGgaccuccccgaGGCCGUucgggGGGCGCCc- -3'
miRNA:   3'- -CUCGACCGGUa----------CCGGUA-----UUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 92350 0.67 0.863246
Target:  5'- cGGCcGGCCAgacGGCCcc---CGCCGAg -3'
miRNA:   3'- cUCGaCCGGUa--CCGGuauuuGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 63129 0.67 0.863246
Target:  5'- aGGCaGGCCGUgugcaGGCCcUGcAUGCCGAu -3'
miRNA:   3'- cUCGaCCGGUA-----CCGGuAUuUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 45120 0.67 0.863246
Target:  5'- uAGCgacGGCCGUGuGCCAgu--CGCCa- -3'
miRNA:   3'- cUCGa--CCGGUAC-CGGUauuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 101939 0.67 0.855443
Target:  5'- aGGGC-GGCCA-GGCCGggAAACaGCUGGg -3'
miRNA:   3'- -CUCGaCCGGUaCCGGUa-UUUG-CGGCU- -5'
5552 3' -55.5 NC_001806.1 + 23068 0.67 0.855443
Target:  5'- aGGCc-GCCGUGGCCGccgUGcGCGCCGu -3'
miRNA:   3'- cUCGacCGGUACCGGU---AUuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 22844 0.67 0.847431
Target:  5'- -cGCUGGCCGagGGCUuc-GACGgCGAc -3'
miRNA:   3'- cuCGACCGGUa-CCGGuauUUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 21907 0.67 0.847431
Target:  5'- cGAGCgccgccgGGCCcgcgcggcgGUGGCCGgccgcGACGCCa- -3'
miRNA:   3'- -CUCGa------CCGG---------UACCGGUau---UUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 16470 0.67 0.847431
Target:  5'- cAGCuUGGCCAUGGUCGagggGGGCuuGCCGc -3'
miRNA:   3'- cUCG-ACCGGUACCGGUa---UUUG--CGGCu -5'
5552 3' -55.5 NC_001806.1 + 120106 0.67 0.839217
Target:  5'- cGGGCccugGGCCA-GGCCAUccGgGCCGc -3'
miRNA:   3'- -CUCGa---CCGGUaCCGGUAuuUgCGGCu -5'
5552 3' -55.5 NC_001806.1 + 132656 0.67 0.839217
Target:  5'- -cGCggGGCCGcGGCCGcuuACGCCGc -3'
miRNA:   3'- cuCGa-CCGGUaCCGGUauuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 150662 0.67 0.839217
Target:  5'- uGGUUGGCCG-GGCCccgccGCGCUGGc -3'
miRNA:   3'- cUCGACCGGUaCCGGuauu-UGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 34398 0.68 0.830809
Target:  5'- uGGGC-GGCgGUGGCCGggccGgGCCGGg -3'
miRNA:   3'- -CUCGaCCGgUACCGGUauu-UgCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.