miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 5' -51.8 NC_001806.1 + 2400 0.67 0.973111
Target:  5'- aUCCAGGCc-GCCAUGcggcgcagcggGCCcgaggCGCGCa -3'
miRNA:   3'- gAGGUUCGaaCGGUAC-----------UGGua---GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 9531 0.67 0.970203
Target:  5'- uCUCCGGGgggGCCAgccacggGACCugGUCGCGUu -3'
miRNA:   3'- -GAGGUUCgaaCGGUa------CUGG--UAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 36848 0.67 0.968354
Target:  5'- -gCCGGGCccacccccgccaucUGCCGUGACC--CACGCc -3'
miRNA:   3'- gaGGUUCGa-------------ACGGUACUGGuaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 122799 0.67 0.963726
Target:  5'- uUCCA-GCUUgGCCGUGuggucGCCcccgaaAUCACGCc -3'
miRNA:   3'- gAGGUuCGAA-CGGUAC-----UGG------UAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 71135 0.68 0.956325
Target:  5'- aCUCCGuggaucuGuCUcGCCAggggcUGGCCGUUACGCu -3'
miRNA:   3'- -GAGGUu------C-GAaCGGU-----ACUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 65571 0.68 0.947958
Target:  5'- -cCCGGGCgucuUGUCGgaaaGcACCAUCACGCc -3'
miRNA:   3'- gaGGUUCGa---ACGGUa---C-UGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 2937 0.68 0.947958
Target:  5'- cCUCCGGGCggccggGCCGggccggGACUcUUGCGCu -3'
miRNA:   3'- -GAGGUUCGaa----CGGUa-----CUGGuAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 93869 0.69 0.938592
Target:  5'- aCUCCcGGCUUGCCGgucggcgGGCCcgCGgGa -3'
miRNA:   3'- -GAGGuUCGAACGGUa------CUGGuaGUgCg -5'
5552 5' -51.8 NC_001806.1 + 22787 0.7 0.910717
Target:  5'- -cCCAGGCcgGCCgcGUGGCCGUCGagUGCc -3'
miRNA:   3'- gaGGUUCGaaCGG--UACUGGUAGU--GCG- -5'
5552 5' -51.8 NC_001806.1 + 41365 0.7 0.890949
Target:  5'- aUCCAGGCc-GCCAggGGgCAUCACGg -3'
miRNA:   3'- gAGGUUCGaaCGGUa-CUgGUAGUGCg -5'
5552 5' -51.8 NC_001806.1 + 76650 0.7 0.890949
Target:  5'- gUCCcGGCga-CCGUGGCCAagACGCu -3'
miRNA:   3'- gAGGuUCGaacGGUACUGGUagUGCG- -5'
5552 5' -51.8 NC_001806.1 + 23617 0.7 0.883866
Target:  5'- gCUCCccGCgcGCCGUGGCCGagcUCACGg -3'
miRNA:   3'- -GAGGuuCGaaCGGUACUGGU---AGUGCg -5'
5552 5' -51.8 NC_001806.1 + 75304 0.71 0.876545
Target:  5'- uUCCuAGCg-GCCAUGGCCGacaGCGCc -3'
miRNA:   3'- gAGGuUCGaaCGGUACUGGUag-UGCG- -5'
5552 5' -51.8 NC_001806.1 + 63124 0.72 0.819112
Target:  5'- gCUUCAGGCagGCCGUGugCAggcccugCAUGCc -3'
miRNA:   3'- -GAGGUUCGaaCGGUACugGUa------GUGCG- -5'
5552 5' -51.8 NC_001806.1 + 89468 0.74 0.722497
Target:  5'- -cCCAGGCUcGCCcgGGCCggCAUGUg -3'
miRNA:   3'- gaGGUUCGAaCGGuaCUGGuaGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 120102 0.74 0.71221
Target:  5'- cCUCCGGGCccuggGCCA-GGCCAUCcgggccGCGCu -3'
miRNA:   3'- -GAGGUUCGaa---CGGUaCUGGUAG------UGCG- -5'
5552 5' -51.8 NC_001806.1 + 72462 0.75 0.649302
Target:  5'- gUUC-AGCgaacgGCgCGUGGCCAUCACGCa -3'
miRNA:   3'- gAGGuUCGaa---CG-GUACUGGUAGUGCG- -5'
5552 5' -51.8 NC_001806.1 + 11469 0.76 0.606939
Target:  5'- gCUCCgAGGCggGCCAUGGCCGcuucguUCACcGCg -3'
miRNA:   3'- -GAGG-UUCGaaCGGUACUGGU------AGUG-CG- -5'
5552 5' -51.8 NC_001806.1 + 139354 0.76 0.585845
Target:  5'- aCUCUacgGAGCUgGCCAUGGCCAUaaACGCc -3'
miRNA:   3'- -GAGG---UUCGAaCGGUACUGGUAg-UGCG- -5'
5552 5' -51.8 NC_001806.1 + 91806 0.78 0.503454
Target:  5'- aUCCGAGaccGCCG-GACCAUCAUGCa -3'
miRNA:   3'- gAGGUUCgaaCGGUaCUGGUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.